PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI06G12620.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 717aa    MW: 81789.3 Da    PI: 10.1022
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI06G12620.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.84.4e-07502542346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +WT+eE e++ + v++ G+  W + a+++g  +++ ++k+ w+ 
  ORUFI06G12620.1 502 KWTPEEYEKIRRHVEKNGTS-WISLAQELG--KSEIHLKDTWRR 542
                      8*****************99.********8..9*******9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.2426497IPR001005SANT/Myb domain
PROSITE profilePS500903.95429495IPR017877Myb-like domain
SuperFamilySSF466898.58E-7475549IPR009057Homeodomain-like
SMARTSM007170.51499546IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-6501549IPR009057Homeodomain-like
PROSITE profilePS500906.806502544IPR017877Myb-like domain
PfamPF139211.5E-5503546No hitNo description
SMARTSM0071721564630IPR001005SANT/Myb domain
PROSITE profilePS500906.574565628IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.2E-5567647IPR009057Homeodomain-like
SuperFamilySSF466891.92E-6608685IPR009057Homeodomain-like
PROSITE profilePS500907.898630683IPR017877Myb-like domain
SMARTSM0071719634685IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 717 aa     Download sequence    Send to blast
MWKRALGLDF RGSKAAPLAP LSRRPSPSPA IRRSSAVSQR RRTARRHPAP SRGSSLPGWS  60
PRARRTHSSS APRAVTPTMG GEGAERRSKK KEKGKRQEEK AESGSRGDGE AVKLDLATDF  120
PSNSMGKVAM DVEEAKEVHR RKKRKEKEKD HGKEKKNKVI ADNIEEACAE AEQAEASGLK  180
VEQHCSEHVQ GDMSKCGSEE DKSIKKDNKL MKKKKKKERK VEMAEEGQIL AGSTDENAGL  240
LHAEMGRGEK EQGKKSKKSK RKHEDGEPVA DGSAGDEIMT NRDKKRRRKE HSVELKEGDQ  300
VNISKKAVKI KGNKKRKNES DKFNPDLSTD ALTGEDKVGG DGKNDKRKKK NDTSTRRNEV  360
GRDDKNDKKK KKSKERNGGR KGEKEKAAQS KDKVRRVSFS DAVEVFSIND GEDEDNGKSA  420
ESEVVHGKRF TPEENATLME AIMSYIEMKQ LGENGLEMIR ACSKHPELKG CWAEIGKSLP  480
HRPLTAIYKR ARILLYRSDE RKWTPEEYEK IRRHVEKNGT SWISLAQELG KSEIHLKDTW  540
RRIKPKNLKS VARFCISIKW KDSLQSQWTQ DEYQNLFDLV NLDLRVKAHQ EYDAGNRKLR  600
DNIAWEAISD KLTTRNHKNC CLKWYYQLAS PLVQKGIWAD TDDYRLVEAL QNVDAVCVED  660
IDWDNLLDHR SGEVCRQRWN EMVRYLGGHK EKPFIEQVEV LSKRYCPEMV DYREGEA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140145RKKRKE
2140146RKKRKEK
3211219KKKKKKERK
4283288KKRRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0061660.0AP006166.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:B1435D02.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643783.10.0RNA polymerase I termination factor isoform X1
TrEMBLA0A0E0PWS90.0A0A0E0PWS9_ORYRU; Uncharacterized protein
STRINGORUFI06G12620.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54052635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.18e-94MYB_related family protein