PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI06G10320.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 142aa MW: 16351.7 Da PI: 11.9206 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.5 | 8.3e-15 | 37 | 85 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT+e+d l ++ ++G+++W+++a+ m+ +R++ qc++rw+++l ORUFI06G10320.1 37 AWTPELDAVLERLAMEHGSRHWRRVAAQMPrhsSRRSPAQCRDRWRDHL 85 7*********************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.738 | 30 | 89 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-8 | 34 | 87 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.7E-16 | 37 | 109 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.2E-16 | 37 | 102 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.9E-14 | 37 | 85 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.07E-8 | 37 | 85 | No hit | No description |
SMART | SM00717 | 74 | 90 | 128 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 142 aa Download sequence Send to blast |
MDMELSSSSS AASVFASSSA TSPPLGRCVV RIRLPPAWTP ELDAVLERLA MEHGSRHWRR 60 VAAQMPRHSS RRSPAQCRDR WRDHLARDVF HRPFTAADDA ELARLCLRLD DGRSSRAVKR 120 RWRELRKSDA FLGKLWRRPL SH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 115 | 120 | RAVKRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012614 | 0.0 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015642267.1 | 1e-93 | transcription factor MYB44 | ||||
TrEMBL | A0A0E0PW14 | 3e-94 | A0A0E0PW14_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI06G10320.1 | 5e-95 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8360 | 13 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67300.1 | 3e-14 | myb domain protein r1 |