PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI06G09830.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 172aa    MW: 19420 Da    PI: 11.6091
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI06G09830.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.52.4e-163884348
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqkyl 48
                     +WT+eEd  l ++  ++G+++W+++a+ m+  +R++ qc++rw+++l
  ORUFI06G09830.1 38 AWTPEEDAALERLAMEHGSRHWRRVAAQMPrRRRSPAQCRDRWRDHL 84
                     7*******************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.1673188IPR017930Myb domain
SMARTSM007175.1E-133586IPR001005SANT/Myb domain
SuperFamilySSF466899.17E-1836139IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-183895IPR009057Homeodomain-like
CDDcd001671.83E-123884No hitNo description
PfamPF002491.3E-153884IPR001005SANT/Myb domain
SMARTSM007170.5989145IPR001005SANT/Myb domain
PROSITE profilePS500905.78492143IPR017877Myb-like domain
PfamPF139213.9E-593144No hitNo description
Gene3DG3DSA:1.10.10.602.4E-596142IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MDMELSSSSS SSSTTVASSP ASSPPLGRCV LRFRLPPAWT PEEDAALERL AMEHGSRHWR  60
RVAAQMPRRR RSPAQCRDRW RDHLARDVFH RPFTAADDAE LARLCLRLDD DAGFAAGRRW  120
KDVSRAVYGR SSCAVKRRWR ELRRSDAFLG ALWRPRTTTT APPANAAITT TC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3osf_A2e-153913914103MYB21
3osf_D2e-153913914103MYB21
3osg_A2e-153913914103MYB21
3osg_D2e-153913914103MYB21
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0046510.0AP004651.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0091G06.
GenBankAP0051070.0AP005107.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0431E05.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642261.11e-103transcription factor MYB44
TrEMBLA0A0E0PVV21e-117A0A0E0PVV2_ORYRU; Uncharacterized protein
STRINGORUFI06G09830.11e-118(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83601346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.11e-09myb domain protein 73