PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI06G07240.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 215aa    MW: 21826.2 Da    PI: 4.1095
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI06G07240.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2249.9e-0837623055
              AP2 30 rfslgkfgtaeeAakaaiaarkkleg 55
                     r++lg++ tae Aa+a++aa ++l+g
  ORUFI06G07240.1 37 RIWLGSYSTAEAAARAYDAALLCLKG 62
                     89*********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103214.605670IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-112171IPR016177DNA-binding domain
SMARTSM003801.0E-92276IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.4E-153270IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MVKTAASNGA AAARRVGGGG DGKRAAYKGD EELGKPRIWL GSYSTAEAAA RAYDAALLCL  60
KGSAADLNFP VHLPFHIPAA AMSPKSIQRV AAAAAANANA NASSSCSAAV FAGVDDSGGA  120
SASEASTPAC SSSDGAASPS PVSSPETVIS DVDVDYSLLA DIEAFFQSPK CMEYAMMDPC  180
SAFFAPPPPP AMAMEEECGW EEEGDIALWS FSSLD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0046870.0AP004687.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0021C04.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881784.14e-85ethylene-responsive transcription factor ERF014
TrEMBLA0A0E0PUY91e-150A0A0E0PUY9_ORYRU; Uncharacterized protein
STRINGORUFI06G07240.11e-151(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31973469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.16e-10ERF family protein