PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI06G06900.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB | ||||||||
Protein Properties | Length: 257aa MW: 27758.1 Da PI: 9.5524 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.8 | 4e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT Ed+ l+ ++k +G g W+ ++++ g++R++k+c++rw++yl ORUFI06G06900.1 14 RGAWTSKEDDVLASYIKSHGEGKWREVPQRAGLRRCGKSCRLRWLNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50 | 6.9e-16 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ +E+el+v+++++lG++ W++Ia +++ gRt++++k++w++ ORUFI06G06900.1 67 RGNIDDDEEELIVRLHTLLGNR-WSLIAGRLP-GRTDNEIKNYWNST 111 6777789***************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-22 | 6 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.29 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.82E-27 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.37E-8 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.966 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.8E-23 | 64 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.0E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.6E-13 | 68 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.13E-10 | 72 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006633 | Biological Process | fatty acid biosynthetic process | ||||
GO:0006970 | Biological Process | response to osmotic stress | ||||
GO:0010023 | Biological Process | proanthocyanidin biosynthetic process | ||||
GO:0090379 | Biological Process | secondary cell wall biogenesis involved in seed trichome differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MGRRACCAKE GMKRGAWTSK EDDVLASYIK SHGEGKWREV PQRAGLRRCG KSCRLRWLNY 60 LRPNIKRGNI DDDEEELIVR LHTLLGNRWS LIAGRLPGRT DNEIKNYWNS TLSRKIGTAA 120 TAAAGSRGGS TPDTARATDA ASSSSVVPPG QQQQPASRAD TDTATAAAAA AATTTTVWAP 180 KAVRCTRGFF FHDRETAPLA AAAPAPAGEL GDGDDVDCDY YCSGSTDVVE LIPGGRRAVL 240 LRRRRLDGRR ESLGDIS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-25 | 12 | 118 | 5 | 110 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Controls the expression of genes involved in anthocyanin biosynthesis. Regulates the expression of at least 3 structural genes: chalcone synthase, dihydroflavonol reductase and flavonol O(3) glucosyltransferase. C1 acts as a trans-acting factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ379703 | 0.0 | HQ379703.1 Oryza sativa Japonica Group isolate Z418-A C1 protein (C1) mRNA, complete cds. | |||
GenBank | Y15219 | 0.0 | Y15219.1 Oryza sativa mRNA for transcriptional activator. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015642631.1 | 1e-128 | anthocyanin regulatory C1 protein | ||||
Swissprot | P10290 | 2e-83 | MYBC_MAIZE; Anthocyanin regulatory C1 protein | ||||
TrEMBL | A0A0E0PUU7 | 0.0 | A0A0E0PUU7_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI06G06900.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16720.1 | 2e-58 | myb domain protein 7 |