PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI06G06220.2
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 488aa    MW: 51860.1 Da    PI: 5.2583
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI06G06220.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.14.9e-11337382555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h+++Er RR++i +++ +L+ l+P++      K +Ka++L + ++Y+k Lq
  ORUFI06G06220.2 337 HSIAERLRREKISERMKNLQVLVPNS-----NKADKASMLDEIIDYVKFLQ 382
                      99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.99E-12330386No hitNo description
SuperFamilySSF474592.36E-16330392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.666332381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.9E-16334391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-8337382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.1E-13338387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MSKMGDRRAI MDYSAGSYMW PGNSGSENYN FVDGSSESYA EEGSLPPSGY FMGAGSDRSL  60
KITENERNPT MLANGCLPYN TQAHPLSGQI LPKGELPNNL LDLQQLQNSS NLRSNSIPPG  120
VLQCNSTSGT FDAKLDTPGL AELPHALSSS IDSNGSDISA FLADVHAVSS APTLCSAFQN  180
VSSFMEPVNL DAFGFQGAQN VAMLNKTSLP NGNPSLFDNA AIASLHDSKE FLNGGSIPSF  240
GTVLQALGAG GLKAAQQEQN IRNIPLPTFT SGSHLAVTDA QGPPLPSKIP PLIHDHNSEY  300
PINHSSDVEP QANSAPGNSA NAKPRTRARR GQATDPHSIA ERLRREKISE RMKNLQVLVP  360
NSNKADKASM LDEIIDYVKF LQLQVKVLSM SRLGAPGAVL PLLRESQTEC HSNPSLSAST  420
ISQGPPDMPD SEDSSAFEQE VVKLMETSIT SAMQYLQNKG LCLMPIALAS AISNQKGMAA  480
AAAIPPEK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0656670.0AK065667.1 Oryza sativa Japonica Group cDNA clone:J013042L14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644031.10.0transcription factor SPATULA isoform X1
RefseqXP_025882097.10.0transcription factor SPATULA isoform X1
TrEMBLA0A0E0PUL10.0A0A0E0PUL1_ORYRU; Uncharacterized protein
STRINGORUFI06G06220.20.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32543879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.14e-56LJRHL1-like 3