PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI06G06220.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 411aa    MW: 43929.4 Da    PI: 6.1064
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI06G06220.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.43.9e-11260305555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h+++Er RR++i +++ +L+ l+P++      K +Ka++L + ++Y+k Lq
  ORUFI06G06220.1 260 HSIAERLRREKISERMKNLQVLVPNS-----NKADKASMLDEIIDYVKFLQ 305
                      99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.48E-12253309No hitNo description
SuperFamilySSF474591.83E-16253315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.666255304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.4E-16257314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-8260305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.1E-13261310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MSKMGDRRAI MDYSAGSYMW PGNSGSENYN FVDGSSESYA EEGSLPPSGY FMGAGSDRSL  60
KITENERNPT MLANGCLPYN TQAHPLSGQI LPKAPTLCSA FQNVSSFMEP VNLDAFGFQG  120
AQNVAMLNKT SLPNGNPSLF DNAAIASLHD SKEFLNGGSI PSFGTVLQAL GAGGLKAAQQ  180
EQNIRNIPLP TFTSGSHLAV TDAQGPPLPS KIPPLIHDHN SEYPINHSSD VEPQANSAPG  240
NSANAKPRTR ARRGQATDPH SIAERLRREK ISERMKNLQV LVPNSNKADK ASMLDEIIDY  300
VKFLQLQVKV LSMSRLGAPG AVLPLLRESQ TECHSNPSLS ASTISQGPPD MPDSEDSSAF  360
EQEVVKLMET SITSAMQYLQ NKGLCLMPIA LASAISNQKG MAAAAAIPPE K
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0621270.0AK062127.1 Oryza sativa Japonica Group cDNA clone:001-045-D10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644035.10.0transcription factor bHLH82 isoform X2
TrEMBLA0A0E0PUL00.0A0A0E0PUL0_ORYRU; Uncharacterized protein
STRINGORUFI06G06220.20.0(Oryza rufipogon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.17e-57LJRHL1-like 3