PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI06G04920.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 280aa    MW: 30762.8 Da    PI: 5.5375
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI06G04920.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.98.6e-1264109247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        WTteE+ +++++ + +G g Wk+I+  +   +t+ q+ s+ qky
  ORUFI06G04920.1  64 RFWTTEEHRQFLRGLRVYGRGEWKSISMNFVRSKTPVQVSSHAQKY 109
                      56*****************************9*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.60158114IPR017930Myb domain
SuperFamilySSF466891.94E-1560115IPR009057Homeodomain-like
SMARTSM007171.4E-962112IPR001005SANT/Myb domain
TIGRFAMsTIGR015576.4E-1463112IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.604.3E-963111IPR009057Homeodomain-like
CDDcd001671.12E-866110No hitNo description
PfamPF002491.7E-866109IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MNYYYGGGGA GGAMVFGGAP MGETVEQAAP PVPVVPVVMN RDDDEVNNQG GGRHRAAPTN  60
TTRRFWTTEE HRQFLRGLRV YGRGEWKSIS MNFVRSKTPV QVSSHAQKYF RRVESAAADK  120
QRYSINDVGL NDDTAAMDGT NSYSNNNFGG WQSLAFAGGH LEPVSGGGAA RQVIAPASSS  180
AAAMNSAAQF WAPMLFNPQI QQQFMQMQAQ TQQAWNDQHM MMAAAPMEGA TDTNFEPAGA  240
VNYYYYQQQQ EEEEGGAYGV PADQWMMNQN NNIHNHHETS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0028540.0AP002854.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0014B15.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882004.17e-96transcription factor DIVARICATA
TrEMBLA0A0E0PU560.0A0A0E0PU56_ORYRU; Uncharacterized protein
STRINGORUFI06G04920.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11280.26e-22MYB family protein