PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI06G03890.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 389aa MW: 41245.3 Da PI: 6.1909 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 89.4 | 3e-28 | 141 | 201 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dDg++WrKYGqK++ g++fpr+YYrCt++ gCp++k+v+rs+ d v+++tY+g H+++ ORUFI06G03890.1 141 DDGFSWRKYGQKDILGAKFPRGYYRCTYRnaqGCPATKQVQRSDADLAVFDVTYQGAHTCH 201 8***************************98889**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.8E-28 | 129 | 202 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 22.768 | 135 | 198 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.23E-24 | 139 | 202 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.1E-41 | 140 | 202 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.8E-27 | 141 | 201 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 389 aa Download sequence Send to blast |
MDGGDIHLLL SILADGEEQA RQLGEPAAAA DDEYHGGGRG EEYYRGVARQ LQGTLARAMG 60 IARAIEAAAF AGGGGASGSR GTTGDRSDSP RSADESSGRT ARDAAVAQQE RHHDTIKRRK 120 GLPRWTEKFR VPDASLEATP DDGFSWRKYG QKDILGAKFP RGYYRCTYRN AQGCPATKQV 180 QRSDADLAVF DVTYQGAHTC HQKQRRAAAA GDQPPPPPPQ ADPSGELLVN FRHGLKVETN 240 GLAPPPPPPP TTTTNFHDDQ HFCFPSMPPF HAGVGPPPPP DDALGGGGCN NFSSPPFVSP 300 AGSAAGESYF SMEHSYEPRG GGGHFVMSRG DSSELHEVLA AAASSSAVVD PAAAAGGFDY 360 PLYHGEVDPH LPFPPLFGHA SMYGQYRDA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 9e-19 | 142 | 198 | 18 | 74 | Disease resistance protein RRS1 |
5w3x_D | 9e-19 | 142 | 198 | 18 | 74 | Disease resistance protein RRS1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK241919 | 0.0 | AK241919.1 Oryza sativa Japonica Group cDNA, clone: J075074E04, full insert sequence. | |||
GenBank | AK287985 | 0.0 | AK287985.1 Oryza sativa Japonica Group cDNA, clone: J075093G10, full insert sequence. | |||
GenBank | AY676932 | 0.0 | AY676932.1 Oryza sativa (indica cultivar-group) transcription factor WRKY100 (WRKY100) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015643057.1 | 0.0 | probable WRKY transcription factor 30 | ||||
TrEMBL | A0A0E0PTS8 | 0.0 | A0A0E0PTS8_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI06G03890.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13340 | 27 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11070.2 | 3e-37 | WRKY family protein |