PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI05G21790.3

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Protein Properties

Length: 295aa MW: 33137.3 Da PI: 8.6421

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI05G21790.3	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	58.2	1.5e-18	123	210	1	96
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k++++s+v++ +l lp +f++ h + +++ +++lede+g +++ + +++ + l++GW++F+ ++L++gD++vF+l + ++f ++ ORUFI05G21790.3 123 FVKTMVRSHVSSCFWLGLPTRFCKLHL-P-PKEYKMVLEDEEGGEFDSVY--IGNRTG--LSGGWRGFAMHHNLEDGDSLVFELAEPDRF--KI 208 89*******************8885.3.36679***********..555444..*********************9876777..55 PP EE CS B3 95 kv 96 + ORUFI05G21790.3 209 YI 210 55 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.2E-21	115	212	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.55E-24	116	212	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.32E-27	121	212	No hit	No description
PROSITE profile	PS50863	12.464	123	214	IPR003340	B3 DNA binding domain
Pfam	PF02362	4.1E-17	123	211	IPR003340	B3 DNA binding domain
SMART	SM01019	2.5E-23	123	214	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MAAEAGSAAA GAAYEEERRK RVLENLKHLE DLGIKKMSKS LLEAARLQKS TRASPKPRKK 60 FEVGATEVRR SSRARNSVSG SRIRSTEQGR DYTGRVASYE QQQRAFKKAE RLQNSLDPEN 120 PSFVKTMVRS HVSSCFWLGL PTRFCKLHLP PKEYKMVLED EEGGEFDSVY IGNRTGLSGG 180 WRGFAMHHNL EDGDSLVFEL AEPDRFKIYI IKAVDEDANE SEPADEEAVG DKDTSTEDAA 240 EQDDSPNAEP LKGTKRRKLR GRRLWVFHKT ITTLFVAATD RVFTIIGVPL TTVET

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	250	256	LKGTKRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK068705	0.0	AK068705.1 Oryza sativa Japonica Group cDNA clone:J013160D16, full insert sequence.
GenBank	HQ858877	0.0	HQ858877.1 Oryza sativa Japonica Group isolate UT1755 ABIVP1 transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015639490.1	0.0	B3 domain-containing protein Os05g0481400 isoform X1
Swissprot	Q5KQI4	1e-178	Y5814_ORYSJ; B3 domain-containing protein Os05g0481400
TrEMBL	A0A0E0PP29	0.0	A0A0E0PP29_ORYRU; Uncharacterized protein
STRING	ORUFI05G21790.1	0.0	(Oryza rufipogon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58280.1	5e-43	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349]