PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI05G19440.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 388aa    MW: 41985.9 Da    PI: 6.4397
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI05G19440.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2187.9e-06210229120
                      EEETTTTEEESSHHHHHHHH CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                      ++C+ C+k F+r  n++ H+
  ORUFI05G19440.1 210 FVCHVCNKAFNRYNNMQMHM 229
                      89*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.35E-5206233No hitNo description
Gene3DG3DSA:3.30.160.602.0E-5210229IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.388210237IPR007087Zinc finger, C2H2
PROSITE patternPS000280212232IPR007087Zinc finger, C2H2
PROSITE profilePS508688.135255271IPR003616Post-SET domain
SuperFamilySSF576676.88E-5281317No hitNo description
Gene3DG3DSA:3.30.160.607.1E-4284317IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MVLRACTMVE GSSFVVGGGG GVPFFEWLKP RSSPPPSPSS SSTTTTSSSL TAQRQPRGAG  60
TMLCLPLLGR LGEEPVDADD GGAMNNPPVK EEVSNTTDDY AGVDLNIGLP ATTGGCSSED  120
APMDEDEEDD DDEEEETEDD EEKAAGLEGC KVEEEEREQV HSEGSKYYVS VGGGEDQSSN  180
AGDVDAGAAC RGRRYWIPTP AQILIGPVQF VCHVCNKAFN RYNNMQMHMW GHGREYRKGP  240
ESLKGTQATA TLAMLKLPCY CCAAGCRNNV GHPRARPLKD FRTLQTHYKR KHGAKPFACR  300
RCAKPFAVKG DWRTHEKNCG KRWFCACGSD FKHKRSLNDH VRSFGGGHFP VAAAAAAAHA  360
AAAPPKQQQR IIRFDDAMAQ MHGGGLMN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1026580.0AK102658.1 Oryza sativa Japonica Group cDNA clone:J033101H19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640742.10.0protein TRANSPARENT TESTA 1 isoform X1
TrEMBLA0A0E0PN570.0A0A0E0PN57_ORYRU; Uncharacterized protein
STRINGORUFI05G19440.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44723667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51220.16e-95WIP domain protein 5