PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI05G05890.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 194aa    MW: 21400.7 Da    PI: 6.269
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI05G05890.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.63.4e-3095153159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDg++WrKYG+K vk+s++pr+YYrC+++gC+vkk+ver++ed ++v++tY g Hnh 
  ORUFI05G05890.1  95 LDDGFKWRKYGKKAVKNSPNPRNYYRCSTEGCNVKKRVERDREDHRYVITTYDGVHNHA 153
                      59********************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-3283155IPR003657WRKY domain
SuperFamilySSF1182901.7E-2787155IPR003657WRKY domain
PROSITE profilePS5081131.42290155IPR003657WRKY domain
SMARTSM007742.5E-3495154IPR003657WRKY domain
PfamPF031062.9E-2396152IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MAASVGLNPE AFFFSNSYSY SSSPFMASYT PEFSAAAIDA NLFSGELDFD CSLPAPAQEY  60
PENENTMMRY ESEEKMRARV NGRIGFRTRS EVEILDDGFK WRKYGKKAVK NSPNPRNYYR  120
CSTEGCNVKK RVERDREDHR YVITTYDGVH NHASPAAAAA ALQYAAAAGD YYSPPLSSAG  180
SPPAAYSAGG SLLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-2781156378Probable WRKY transcription factor 4
2lex_A9e-2781156378Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00531DAPTransfer from AT5G26170Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8328020.0CT832802.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN033C24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638018.11e-142probable WRKY transcription factor 50
TrEMBLA0A0E0PIC81e-140A0A0E0PIC8_ORYRU; Uncharacterized protein
TrEMBLA0A0P0WIN41e-140A0A0P0WIN4_ORYSJ; Os05g0183100 protein (Fragment)
TrEMBLQ65WY51e-140Q65WY5_ORYSJ; Os05g0183100 protein
TrEMBLQ6IEL41e-140Q6IEL4_ORYSI; WRKY transcription factor 67
STRINGORUFI05G05890.11e-141(Oryza rufipogon)
STRINGOS05T0183100-011e-141(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.12e-39WRKY DNA-binding protein 50