PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI05G01600.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 416aa    MW: 47468 Da    PI: 8.5554
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI05G01600.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.52.6e-06144168123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      ++C+   C+ s+srk++L+rH+ tH
  ORUFI05G01600.1 144 FSCHvdGCPFSYSRKDHLNRHLLTH 168
                      89*********************99 PP
2zf-C2H211.10.0012173198123
                      EEET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                      + Cp   C++ F+ k n +rH +  H
  ORUFI05G01600.1 173 FACPmeGCNRKFTIKGNIQRHVQEmH 198
                      78*******************98877 PP
3zf-C2H220.61.2e-06210234123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      + Cp  +Cgk+F+  s L++H  +H
  ORUFI05G01600.1 210 FICPeeNCGKTFKYASKLQKHEESH 234
                      78*******************9988 PP
4zf-C2H216.82e-05301325223
                      EET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                      +C+  dC+ sFs ksnL +H +  H
  ORUFI05G01600.1 301 RCHlkDCKLSFSKKSNLDKHVKAvH 325
                      7*******************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355153355IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.0E-9141170IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.74E-6141170No hitNo description
PROSITE profilePS501579.349144173IPR007087Zinc finger, C2H2
SMARTSM003550.0016144168IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280146168IPR007087Zinc finger, C2H2
SuperFamilySSF576671.15E-5171199No hitNo description
Gene3DG3DSA:3.30.160.601.3E-6171199IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.866173203IPR007087Zinc finger, C2H2
SMARTSM003550.0019173198IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280175198IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.3E-7206234IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.47E-5207236No hitNo description
PROSITE profilePS5015711.24210234IPR007087Zinc finger, C2H2
SMARTSM003550.0018210234IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280212234IPR007087Zinc finger, C2H2
SMARTSM003557.8242267IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280244267IPR007087Zinc finger, C2H2
SMARTSM0035513270291IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.48E-7281342No hitNo description
PROSITE profilePS5015711.967300330IPR007087Zinc finger, C2H2
SMARTSM003550.031300325IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.4E-5301326IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280302325IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.6E-6327354IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003554.7331357IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.974331362IPR007087Zinc finger, C2H2
PROSITE patternPS000280333357IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MGSVELGAEE REVAGGEGGS KGAAPPARDI RRYKCDFCSV VRSKKGLIRA HVLEHHKDEV  60
DDLDDYLGRG GGETCKEMDH DCKHWIPENS KMREGLEWTS TRMGRPFWEA PSRMPLSRSS  120
SGWGDSPEKL HQECLVHTLF QRPFSCHVDG CPFSYSRKDH LNRHLLTHQG KLFACPMEGC  180
NRKFTIKGNI QRHVQEMHKD GSPCESKKEF ICPEENCGKT FKYASKLQKH EESHVKLDYS  240
EVICCEPGCM KAFTNLECLK AHNKSCHRHV VCDVCGTKQL KKNFKRHQRM HEGSCVTERV  300
RCHLKDCKLS FSKKSNLDKH VKAVHEQKRP FVCGFSGCGK SFSYKHVRDN HEKSRAHVYV  360
QANFEEIDGE RPRQAGGRKR KAIPVESLMR KRVAAPDDDA PACDDGTEYL RWLLSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A2e-1314126440157PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D2e-1314126440157PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1016310.0AK101631.1 Oryza sativa Japonica Group cDNA clone:J033054O17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637660.10.0transcription factor IIIA isoform X1
TrEMBLA0A0E0PGU40.0A0A0E0PGU4_ORYRU; Uncharacterized protein
STRINGORUFI05G01600.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23823882
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.27e-94transcription factor IIIA