PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI05G00210.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 475aa    MW: 51506.1 Da    PI: 7.3262
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI05G00210.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.89.1e-09326373455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + + Y++sLq
  ORUFI05G00210.1 326 SHSLAERVRREKISERMKMLQSLVPGC----DKVTGKALMLDEIISYVQSLQ 373
                      8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF057532.1E-5214169No hitNo description
CDDcd000838.07E-11320377No hitNo description
SuperFamilySSF474593.93E-17320392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.675322372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-17322393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-6326373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-10328378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005774Cellular Componentvacuolar membrane
GO:0005783Cellular Componentendoplasmic reticulum
GO:0005794Cellular ComponentGolgi apparatus
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MAQQWRSLLF LLLLLLVPFA AAAGQDAPFV VAQKKVALSR PGPGVERLAV TLNLYNQGSA  60
TAYDVSLNDD SWPQEAFQLI SGTTSKIVEK LDPGATASHN FILETKVQGK FQGSPAIITY  120
RVPTKAALQE AYSTPMFPLD ILAERPPQQK FELRLVGKYG SLVSVVSFVE PLPVPGFPAG  180
CSNLEEKAAA AMAAYEYESS SCSSLDPTSM PMVYSPIVLQ PQECPLSFVF DNAAAAAGDN  240
KWVPGIQGSC PCSLGSTQDM DASWGKSRKH KRSNVGLKGL EEKKARRVVL HQHDDDVKKK  300
AKEAAGGEPP AGYIHVRARR GQATDSHSLA ERVRREKISE RMKMLQSLVP GCDKVTGKAL  360
MLDEIISYVQ SLQNQVEFLS MKLASLSPLM YEFGPGIDMH PDVLRQLAKM PHEMVQCMGQ  420
MGSTGISLQG LGGGPTGFAQ DGSSHINMVV MQVGEQGQQQ GSLHQVEMSS HCFFH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0658640.0AK065864.1 Oryza sativa Japonica Group cDNA clone:J013044E05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640733.10.0transcription factor bHLH63 isoform X1
RefseqXP_015640734.10.0transcription factor bHLH63 isoform X1
RefseqXP_015640735.10.0transcription factor bHLH63 isoform X1
TrEMBLA0A0E0PGC50.0A0A0E0PGC5_ORYRU; Uncharacterized protein
STRINGORUFI05G00210.10.0(Oryza rufipogon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.23e-47bHLH family protein