PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI04G31260.3
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 335aa    MW: 37654.1 Da    PI: 9.8064
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI04G31260.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.21.7e-19201296395
                      EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
               B3   3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                      k+lt+sdv++ gr+v+pk+ ae+h   + ++e++tl++ d +   +W++k+++  ++ks++yvl+  + +Fvk +gL++gD+++++ + +++++
  ORUFI04G31260.3 201 KELTNSDVGNIGRIVMPKRDAEAHlpALHQREGVTLKMDDfKFETTWNFKYRFwpNNKSRMYVLE-STGGFVKHHGLQTGDIFIIYKS-SESGK 292
                      89************************888999********7778*******9989999999**99.9*******************43.37777 PP

                      .EEE CS
               B3  92 lvvk 95 
                      +vv+
  ORUFI04G31260.3 293 FVVR 296
                      7775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.97E-19198294IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-25198298IPR015300DNA-binding pseudobarrel domain
CDDcd100171.00E-23198296No hitNo description
PROSITE profilePS508639.516199301IPR003340B3 DNA binding domain
SMARTSM010194.2E-9199299IPR003340B3 DNA binding domain
PfamPF023622.1E-15201296IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MPRNPVYTSF HPAAIEDHHA PLFHSNNHDI DPEFLGNRHL HGVDIAGAPP AKATSPATAG  60
GLLTNTAPAT VSQIHARCRR RQIYRCCGLL PRAPPPSDPC AFTRAAITAA RSARGLLSHL  120
YGGLVFWLVG KRKLGEKRER KRKVVAEMDP PIVFRRSDME SEKNDDNPDQ TPVSEPPSMN  180
QNGENLIIRF NCREYRVILR KELTNSDVGN IGRIVMPKRD AEAHLPALHQ REGVTLKMDD  240
FKFETTWNFK YRFWPNNKSR MYVLESTGGF VKHHGLQTGD IFIIYKSSES GKFVVRGEKA  300
IKPNAIMPVV DCSCKNELNK SEECGFTISL QTKKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A5e-351963002106B3 domain-containing transcription factor FUS3
6j9b_D5e-351963002106B3 domain-containing transcription factor FUS3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0728740.0AK072874.1 Oryza sativa Japonica Group cDNA clone:J023145I07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880492.11e-135putative B3 domain-containing protein Os04g0676650
SwissprotQ7XKC41e-136Y4765_ORYSJ; Putative B3 domain-containing protein Os04g0676650
TrEMBLA0A0E0PFQ40.0A0A0E0PFQ4_ORYRU; Uncharacterized protein
STRINGOBART04G29560.10.0(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.11e-38B3 family protein