PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI04G27160.2
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 333aa    MW: 36482.9 Da    PI: 9.1396
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI04G27160.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.72.4e-49111741128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpk.........................kvkaeekewyfFskrdkky 68 
                      lppGfrFhP+deelvv+yL +k++g       v + +vd++k+ePw+Lp+                         +++ + +ewyfFs +d+ky
  ORUFI04G27160.2  11 LPPGFRFHPRDEELVVDYLYHKLSGGGEFYGGVaMVDVDLNKCEPWELPAyflhnliifparararaagrrrradAARVGATEWYFFSLHDRKY 104
                      79**********************9995554555***************6699**********9999998887664445888************ PP

              NAM  69 atgkrknratksgyWkatgkdkevlsk..........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      atg+r+nrat+sgyWkatgkd++++++          +ge+vg++ktLvfy+grap+g+kt+Wvmhe+r+
  ORUFI04G27160.2 105 ATGQRTNRATRSGYWKATGKDRAIVTRrraaageavaGGEVVGMRKTLVFYQGRAPRGSKTEWVMHEFRV 174
                      **************************977777777776777***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.18E-513207IPR003441NAC domain
PROSITE profilePS5100552.02311207IPR003441NAC domain
PfamPF023656.9E-2612174IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MSLISMMEAN LPPGFRFHPR DEELVVDYLY HKLSGGGEFY GGVAMVDVDL NKCEPWELPA  60
YFLHNLIIFP ARARARAAGR RRRADAARVG ATEWYFFSLH DRKYATGQRT NRATRSGYWK  120
ATGKDRAIVT RRRAAAGEAV AGGEVVGMRK TLVFYQGRAP RGSKTEWVMH EFRVDGHAVA  180
DHPSSSTSSS SSNLLKEDWV LCRVFYKSRT ATPRAVVSGE AAVSLLSGEL SLPPPLPPPV  240
APAVVDGYTG GGYYEQDSSA GYHHHHHHRP PPSAALPFKD LTDFRDLLSN MAQGGGGGAA  300
AAKTEGFHLG WSEEESSGYV QQSAMASQAW NPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A7e-41621115172NAC domain-containing protein 19
3swm_B7e-41621115172NAC domain-containing protein 19
3swm_C7e-41621115172NAC domain-containing protein 19
3swm_D7e-41621115172NAC domain-containing protein 19
3swp_A7e-41621115172NAC domain-containing protein 19
3swp_B7e-41621115172NAC domain-containing protein 19
3swp_C7e-41621115172NAC domain-containing protein 19
3swp_D7e-41621115172NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2876320.0AK287632.1 Oryza sativa Japonica Group cDNA, clone: J065074F02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633392.11e-172NAC domain-containing protein 21/22
TrEMBLA0A0E0PE570.0A0A0E0PE57_ORYRU; Uncharacterized protein
STRINGORUFI04G27160.20.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101237138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12977.13e-61NAC family protein