PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI04G27160.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 308aa    MW: 33576.5 Da    PI: 7.0107
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI04G27160.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.44.8e-52111491128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                      lppGfrFhP+deelvv+yL +k++g       v + +vd++k+ePw+Lp +++ + +ewyfFs +d+kyatg+r+nrat+sgyWkatgkd++++
  ORUFI04G27160.1  11 LPPGFRFHPRDEELVVDYLYHKLSGGGEFYGGVaMVDVDLNKCEPWELPDAARVGATEWYFFSLHDRKYATGQRTNRATRSGYWKATGKDRAIV 104
                      79**********************9995554555***************8888899************************************** PP

              NAM  94 sk..........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++          +ge+vg++ktLvfy+grap+g+kt+Wvmhe+r+
  ORUFI04G27160.1 105 TRrraaageavaGGEVVGMRKTLVFYQGRAPRGSKTEWVMHEFRV 149
                      *977777777776777***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.94E-583182IPR003441NAC domain
PROSITE profilePS5100555.28211182IPR003441NAC domain
PfamPF023651.7E-2612149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MSLISMMEAN LPPGFRFHPR DEELVVDYLY HKLSGGGEFY GGVAMVDVDL NKCEPWELPD  60
AARVGATEWY FFSLHDRKYA TGQRTNRATR SGYWKATGKD RAIVTRRRAA AGEAVAGGEV  120
VGMRKTLVFY QGRAPRGSKT EWVMHEFRVD GHAVADHPSS STSSSSSNLL KEDWVLCRVF  180
YKSRTATPRA VVSGEAAVSL LSGELSLPPP LPPPVAPAVV DGYTGGGYYE QDSSAGYHHH  240
HHHRPPPSAA LPFKDLTDFR DLLSNMAQGG GGGAAAAKTE GFHLGWSEEE SSGYVQQSAM  300
ASQAWNPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-46618612169NO APICAL MERISTEM PROTEIN
1ut4_B1e-46618612169NO APICAL MERISTEM PROTEIN
1ut7_A1e-46618612169NO APICAL MERISTEM PROTEIN
1ut7_B1e-46618612169NO APICAL MERISTEM PROTEIN
4dul_A1e-46618612169NAC domain-containing protein 19
4dul_B1e-46618612169NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2876320.0AK287632.1 Oryza sativa Japonica Group cDNA, clone: J065074F02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633392.11e-178NAC domain-containing protein 21/22
TrEMBLA0A0E0PE560.0A0A0E0PE56_ORYRU; Uncharacterized protein
STRINGORUFI04G27160.21e-170(Oryza rufipogon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12977.19e-69NAC family protein