PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI04G25870.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Trihelix | ||||||||
Protein Properties | Length: 277aa MW: 32240 Da PI: 7.4606 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 81.8 | 9.6e-26 | 21 | 106 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrg....klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W qe+++Li+ar eme+++ ++ +++k+lWe+vs+++rerg++r+++qCk+kw+nl +ryk ++++ ++ ++cp+fd+l+ ORUFI04G25870.1 21 QWGAQETRELIAARGEMERESAAAaaarRSAKTLWEAVSARLRERGYRRTAEQCKCKWKNLVNRYKGKETSDPEN----GRQCPFFDELH 106 7********************975223369*************************************99999974....678******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.0047 | 18 | 84 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 1.61E-16 | 20 | 89 | No hit | No description |
Pfam | PF13837 | 2.9E-22 | 21 | 107 | No hit | No description |
PROSITE profile | PS50090 | 7.282 | 22 | 82 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0016592 | Cellular Component | mediator complex |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MEPGCGEGGG GGGGRDERVP QWGAQETREL IAARGEMERE SAAAAAARRS AKTLWEAVSA 60 RLRERGYRRT AEQCKCKWKN LVNRYKGKET SDPENGRQCP FFDELHAVFT ERARTMQQQL 120 LESESGPSVK KKLKRPSGDL SSEDSDDEED GGGDSGDEKP IRSRKRKIAD KRQQSQRMAE 180 KSRTSISSIH ELLQDFLVQQ QRMDIQWHEM MERRSQERIV FEQEWRQSMQ KLEQERLMLE 240 HTWMEREEQR RMREEARAEK RDALLTTLLN KVLQEDL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK105720 | 0.0 | AK105720.1 Oryza sativa Japonica Group cDNA clone:001-201-F11, full insert sequence. | |||
GenBank | AL606638 | 0.0 | AL606638.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0041A02, complete sequence. | |||
GenBank | AP014960 | 0.0 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012612 | 0.0 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. | |||
GenBank | CR855228 | 0.0 | CR855228.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: B0403H10-OSIGBa0105A11, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025880753.1 | 0.0 | uncharacterized protein LOC4336887 | ||||
TrEMBL | A0A0E0PDM8 | 0.0 | A0A0E0PDM8_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI04G25870.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10688 | 30 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38250.1 | 6e-28 | Trihelix family protein |