PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI04G22230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 318aa MW: 33200.9 Da PI: 4.7654 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.8 | 3.6e-20 | 151 | 201 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp +ng +r++lg+f+tae+Aa a+++a+ +++g ORUFI04G22230.1 151 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTFDTAEDAALAYDRAAYRMRG 201 8********.***********9987..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.4E-32 | 150 | 209 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.09E-30 | 150 | 209 | No hit | No description |
PROSITE profile | PS51032 | 24.276 | 151 | 209 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.9E-39 | 151 | 215 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.83E-23 | 151 | 211 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.9E-14 | 151 | 201 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.2E-11 | 152 | 163 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.2E-11 | 175 | 191 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MARSMLRNHP EASVLDTIRQ HLLEEPRGGG GGEAAEASFG SLVADMWSDS LPFRDDDADD 60 MVVFGAMRDA FSCGWLPDGV FAEVKPEPLL SPDSSSYDGS SCCFGFADVS EPVTPSDAAS 120 GAAEAAAAAA AATAEHGKEE EAAAAVARGK HYRGVRQRPW GKFAAEIRDP AKNGARVWLG 180 TFDTAEDAAL AYDRAAYRMR GSRALLNFPL RIGSEIAAAA AAAAAAAAGD KRPSPEPATS 240 ESSFSSSSSC TTTTTTSSST SFSGSPKRRK RGEAAAASMS MPLVPPPSQL NWPVQAWYPA 300 AAPVEQVAIT PRVEQLVI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 7e-40 | 147 | 214 | 1 | 68 | ATERF1 |
3gcc_A | 7e-40 | 147 | 214 | 1 | 68 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK243188 | 0.0 | AK243188.1 Oryza sativa Japonica Group cDNA, clone: J100039E18, full insert sequence. | |||
GenBank | AL607006 | 0.0 | AL607006.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0079A21, complete sequence. | |||
GenBank | AP014960 | 0.0 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. | |||
GenBank | EF061888 | 0.0 | EF061888.1 Oryza sativa (japonica cultivar-group) development related ERF protein (DRE) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015636763.1 | 1e-168 | ethylene-responsive transcription factor 2 | ||||
TrEMBL | A0A0E0PCA4 | 0.0 | A0A0E0PCA4_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI04G22230.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3800 | 29 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17500.1 | 5e-28 | ethylene responsive element binding factor 1 |