PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI04G17090.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 910aa    MW: 94238.8 Da    PI: 5.7866
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI04G17090.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.71.6e-30435492260
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                      +Dgy+WrKYGqK+vk se+prsYY+Ct+a+C vkkkvers+ +++v+ei+Y+g+Hnh+k
  ORUFI04G17090.1 435 EDGYSWRKYGQKQVKHSEYPRSYYKCTHASCAVKKKVERSH-EGHVTEIIYKGTHNHPK 492
                      8****************************************.***************85 PP
2WRKY104.94.4e-33666724159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC v+k+ver+++d k v++tYeg+Hnhe
  ORUFI04G17090.1 666 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCLVRKHVERASHDLKSVITTYEGKHNHE 724
                      59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.2E-28423493IPR003657WRKY domain
PROSITE profilePS5081123.571429493IPR003657WRKY domain
SuperFamilySSF1182909.68E-25430493IPR003657WRKY domain
SMARTSM007746.1E-33434492IPR003657WRKY domain
PfamPF031062.3E-23435491IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-36651726IPR003657WRKY domain
SuperFamilySSF1182907.72E-29658726IPR003657WRKY domain
PROSITE profilePS5081137.7661726IPR003657WRKY domain
SMARTSM007749.2E-39666725IPR003657WRKY domain
PfamPF031065.7E-25667724IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 910 aa     Download sequence    Send to blast
MTTATLDPPP PPLLIAGSLL DDDRDAGSAA SSSPRWLPQA RGSTVGSPPR RGGEERGGEA  60
ATRRKGNSSC PDDDDDCRND EDDCRNDDDY RDDDVGATTD GGGDAAALLP MAMMTATTMA  120
PMPVEAAVDG GGELSSAGEG FNSLLEAQLF SSHPLPTICR RPSAPFAFSP MLVYGVLDRL  180
CSVCHLGEME GDIAMEEWKD SNHRGADYLM TMPMQNFLAD AFPPPELLEG EGGFEKHGLS  240
VAVGSPPPTP PPPEDGCSPL PLTPQFGQKF GSGGGGGGGS LISTPNLVFV CAYNGQASPT  300
TGKLHMLGGA NDSNPIRFES PPIEEGSGAF SFKPLNLASS QYAAAEKTKS LPNNQHQSLP  360
ISVKTEATSI QTAQDEAAAN QLMQPQFNGG KRSRAAPDNG GDGEGQPAEG DAKADSSSGA  420
AAVAVVAAAA AAVAEDGYSW RKYGQKQVKH SEYPRSYYKC THASCAVKKK VERSHEGHVT  480
EIIYKGTHNH PKPAASRRPP VHPPPPSPAT TTTTPLPPGD AQADHAPDGG GGSTPVGAGQ  540
AGAEWHNGGV VGGEGLVDAT SSPSVPGELC ESTASMQVHE GAAAAQLGES PEGVDVTSAV  600
SDEVDRDDKA THVLPLAAAA ADGESDELER KRRKLDSCAT MDMSTASRAV REPRVVIQTT  660
SEVDILDDGY RWRKYGQKVV KGNPNPRSYY KCTHPGCLVR KHVERASHDL KSVITTYEGK  720
HNHEVPAARN SGHPAGSASP GGGAGSSSQP HGVGVGGRRP EVPSVQESLM RLGGGCGAAP  780
FPPHFGLHLP PPPPRDPLAP MSNFPYSLGH APSPALRGLP PPPPPPPSAS ALAVAGLGGV  840
VEGLKYPMLA PPSVHSLLRH RQGGGMEAVV VPKAEVKQEA MRPAAAVAGA GRGAAVYQQA  900
MSRVSLGNQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-35417727278Probable WRKY transcription factor 4
2lex_A1e-35417727278Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3418430.0AY341843.1 Oryza sativa (japonica cultivar-group) WRKY2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634497.10.0probable WRKY transcription factor 2 isoform X2
TrEMBLA0A0E0PAE10.0A0A0E0PAE1_ORYRU; Uncharacterized protein
STRINGORUFI04G17090.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP207538100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-83WRKY DNA-binding protein 2