PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI04G17060.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 564aa MW: 58298.9 Da PI: 7.3539

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI04G17060.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.1	0.00062	88	109	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +Cp Cgk+F + + H+r+H ORUFI04G17060.1 88 TCPECGKVFMSDKAMYGHLRSH 109 8*******************99 PP
2	zf-C2H2	13.3	0.00024	362	384	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k+Fs++ L H H ORUFI04G17060.1 362 YECSECHKTFSTHQALGGHVAAH 384 99***********9998887666 PP
3	zf-C2H2	11.5	0.00092	424	446	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C+++F++ L H+r+H ORUFI04G17060.1 424 HQCLRCPMVFPTGQALGGHMRKH 446 79********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.887	87	114	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0066	87	109	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	3.09E-8	88	109	No hit	No description
PROSITE pattern	PS00028	0	89	109	IPR007087	Zinc finger, C2H2
Pfam	PF13912	1.6E-5	89	109	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.09E-8	357	384	No hit	No description
PROSITE profile	PS50157	11.822	362	389	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.02	362	384	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	1.6E-7	362	386	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	364	384	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.12	424	446	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	5.8E-6	424	446	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	426	446	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 564 aa Download sequence Send to blast
MQHGDNNNKK KKGDLSNNLD LSSSPLLMDS RGQAYYHRAA AAAAAVAAGD ATDGEEPAAA 60 ELAPKAVRSK KKLAVEAQGG AAVRDDLTCP ECGKVFMSDK AMYGHLRSHP LRKHKGAARL 120 AAVAAAAADD ASVAAGVKPR PWKVPRTKEE AELGDDRHPG RSPVTGKRGR PASSASSSGS 180 APAPAPPASS RLQLVITEEE EAAMTLLDIA SGCSLDHQPT QPAHVADAAL LAPASDQMPS 240 VDVEQGVLAV AEHRTWEAEK PALVEHVFGI VKEHVAAVAA DAEPQSPEAK TPVKLGPVTD 300 QAVPVLGDKN DDGQADMPVS PGGGTTKKPL KRRLQDVETK HPTAPPPPPV KRIPSPASKR 360 KYECSECHKT FSTHQALGGH VAAHKRQKKS CAEQQQEAVA AAAQVARHNF LAHQRPAGVV 420 VAQHQCLRCP MVFPTGQALG GHMRKHFLEA KEQEQLLAIA IANANANANA NAAPEPPPMM 480 ANAAPVPPPS MANGAGPVPP PIAVAPPPAP PIAGAAPPPP MANGAAAAAP PGGNPAPPAG 540 PQPGVNMFDL NELPNEDEGE NQQP

Sequence ? help Back to Top

Protein Sequence Length: 564 aa Download sequence Send to blast

MQHGDNNNKK KKGDLSNNLD LSSSPLLMDS RGQAYYHRAA AAAAAVAAGD ATDGEEPAAA  60
ELAPKAVRSK KKLAVEAQGG AAVRDDLTCP ECGKVFMSDK AMYGHLRSHP LRKHKGAARL  120
AAVAAAAADD ASVAAGVKPR PWKVPRTKEE AELGDDRHPG RSPVTGKRGR PASSASSSGS  180
APAPAPPASS RLQLVITEEE EAAMTLLDIA SGCSLDHQPT QPAHVADAAL LAPASDQMPS  240
VDVEQGVLAV AEHRTWEAEK PALVEHVFGI VKEHVAAVAA DAEPQSPEAK TPVKLGPVTD  300
QAVPVLGDKN DDGQADMPVS PGGGTTKKPL KRRLQDVETK HPTAPPPPPV KRIPSPASKR  360
KYECSECHKT FSTHQALGGH VAAHKRQKKS CAEQQQEAVA AAAQVARHNF LAHQRPAGVV  420
VAQHQCLRCP MVFPTGQALG GHMRKHFLEA KEQEQLLAIA IANANANANA NAAPEPPPMM  480
ANAAPVPPPS MANGAGPVPP PIAVAPPPAP PIAGAAPPPP MANGAAAAAP PGGNPAPPAG  540
PQPGVNMFDL NELPNEDEGE NQQP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	326	333	KKPLKRRL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL606441	0.0	AL606441.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0089K21, complete sequence.
GenBank	AP014960	0.0	AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBank	CP012612	0.0	CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025880741.1	0.0	zinc finger protein 628-like
TrEMBL	A0A0E0PAD8	0.0	A0A0E0PAD8_ORYRU; Uncharacterized protein
STRING	ORUFI04G17060.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18193	9	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35280.1	2e-11	C2H2-like zinc finger protein