PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI04G13990.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 250aa MW: 25203.7 Da PI: 7.5767 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64 | 3.1e-20 | 70 | 119 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + +r++lg+f tae+Aa+a++aa+++++g ORUFI04G13990.1 70 KYRGVRRRP-WGKWAAEIRDP-----HraARVWLGTFATAEDAARAYDAAALRFRG 119 8********.**********7.....338************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 4.8E-32 | 69 | 128 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.8E-35 | 70 | 133 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.62 | 70 | 127 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.73E-18 | 70 | 129 | No hit | No description |
SuperFamily | SSF54171 | 1.24E-22 | 70 | 128 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.2E-13 | 70 | 119 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-11 | 71 | 82 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-11 | 93 | 109 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MALSEPDLAA ETEAIVSALT HVVAYGCGGP PPGEEAAASA VTPTAPWRAD AGEASAASRA 60 RQVAVPSARK YRGVRRRPWG KWAAEIRDPH RAARVWLGTF ATAEDAARAY DAAALRFRGG 120 RARLNFPEDA AAADARRATD AAAAAAVASS APAALLESQP GDVADCLDYS RILAGAPERP 180 TSSTVTDGFF GGGGNGRFLH SWSIGTSPSS SGSGGAGGGG GGGGGGAPVR PLFHGGNGWE 240 QRGDSAYNGF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-21 | 69 | 127 | 4 | 63 | ATERF1 |
3gcc_A | 1e-21 | 69 | 127 | 4 | 63 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012612 | 0.0 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025880432.1 | 2e-99 | dehydration-responsive element-binding protein 1C-like | ||||
TrEMBL | A0A0E0P980 | 1e-172 | A0A0E0P980_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI04G13990.1 | 1e-172 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14299 | 20 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50080.1 | 2e-16 | ethylene response factor 110 |