PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI04G09430.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 429aa    MW: 47022.1 Da    PI: 9.4499
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI04G09430.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.79e-1321123399
                      EE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
               B3   3 kvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFk 83 
                      kvl+ps+ +k   ++++ + a++            gg +++    ++ ++ g++W+v++    ++ +g+ +l++GW eF+ a+gL  g fvv +
  ORUFI04G09430.1  21 KVLMPSSFHK---MRISDELAADLlgergdgggggGGAPRR--AARVVSPVGKVWDVEVGRddDGDGGGAFLGRGWAEFAAAHGLGMGWFVVVR 109
                      5555555554...4577777777777778888775455444..69999***********6655666666************************* PP

                      E-SSSEE..EEEEE-S CS
               B3  84 ldgrsefelvvkvfrk 99 
                      ++g  ++ l+vk+f++
  ORUFI04G09430.1 110 HEG--GGVLTVKLFDT 123
                      755..7778***9997 PP
2B331.14.1e-101602371696
                      EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
               B3  16 lvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                       ++p kf++++  + ++ +  + ++ ++ g+ W+++l  +k   ++++++GW +F + +g+  gD+v+++++g+  f  ++kv
  ORUFI04G09430.1 160 RRIPAKFVQHYiaE-EHLNIHMASILSPLGKFWRIEL--EKDELGMFFKGGWLQFLSFHGISPGDVVLLRHEGNLVF--KIKV 237
                      689*****888742.333344788999**********..****9**************************8876666..5555 PP
3B3727.7e-23321415186
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.......-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE- CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.......rsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkld 85 
                      ++k+++++++l++g+++lp  f++++g+++e+++tl++++++g       rsWev ++++k++ +   +l +GWk+F++angL +gD+++F+++
  ORUFI04G09430.1 321 WIKKEISNYMLENGNISLPGIFCKSIGLVEETTITLMINSSRGrssssssRSWEVACSVNKNGYGccNLLPSGWKRFCQANGLLVGDVCTFSVV 414
                      7899*****************************************************99666666779***********************964 PP

                      S CS
               B3  86 g 86 
                      +
  ORUFI04G09430.1 415 E 415
                      3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.4E-1318126IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.6E-619124IPR003340B3 DNA binding domain
SuperFamilySSF1019364.51E-1420126IPR015300DNA-binding pseudobarrel domain
CDDcd100173.26E-821122No hitNo description
PfamPF023621.2E-921123IPR003340B3 DNA binding domain
PROSITE profilePS508639.99667124IPR003340B3 DNA binding domain
PROSITE profilePS5086311.11145241IPR003340B3 DNA binding domain
SMARTSM010198.9E-6148241IPR003340B3 DNA binding domain
CDDcd100171.73E-10154238No hitNo description
SuperFamilySSF1019366.87E-15154243IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.9E-13159243IPR015300DNA-binding pseudobarrel domain
PfamPF023626.6E-8161235IPR003340B3 DNA binding domain
SuperFamilySSF1019364.9E-15316425IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-16317425IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.575321427IPR003340B3 DNA binding domain
PfamPF023623.1E-21321425IPR003340B3 DNA binding domain
SMARTSM010192.0E-6322427IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MPGDHAGAGA AVGAAKAMQL KVLMPSSFHK MRISDELAAD LLGERGDGGG GGGGAPRRAA  60
RVVSPVGKVW DVEVGRDDDG DGGGAFLGRG WAEFAAAHGL GMGWFVVVRH EGGGVLTVKL  120
FDTTCCLWDF GARPAGNPKD YLHAKFKFII LVFVLFGEIR RIPAKFVQHY IAEEHLNIHM  180
ASILSPLGKF WRIELEKDEL GMFFKGGWLQ FLSFHGISPG DVVLLRHEGN LVFKIKVFGI  240
NGCKKDLKTK DDITIQQSAR NQHETPSFST RKCNKNSRFG EDCKNQLQEI PCSIKGSRKK  300
GRETKRPKKS KSIYEIGPPS WIKKEISNYM LENGNISLPG IFCKSIGLVE ETTITLMINS  360
SRGRSSSSSS RSWEVACSVN KNGYGCCNLL PSGWKRFCQA NGLLVGDVCT FSVVEATLWH  420
VAIDRVERS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1298307KKGRETKRPK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880727.11e-179LOW QUALITY PROTEIN: putative B3 domain-containing protein Os04g0347400
SwissprotQ7XS740.0Y4474_ORYSJ; Putative B3 domain-containing protein Os04g0347400
TrEMBLA0A0E0GZC40.0A0A0E0GZC4_ORYNI; Uncharacterized protein
TrEMBLA0A0E0P7L50.0A0A0E0P7L5_ORYRU; Uncharacterized protein
STRINGORUFI04G09430.10.0(Oryza rufipogon)
STRINGONIVA04G06710.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.12e-10B3 family protein