PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI03G40740.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 320aa    MW: 33712.2 Da    PI: 9.9739
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI03G40740.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.001109131123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++Cg  F     L  H+r+H
  ORUFI03G40740.1 109 HECHICGLGFEMGQALGGHMRRH 131
                      79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.29E-55180No hitNo description
SMARTSM003550.585577IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.8275582IPR007087Zinc finger, C2H2
PfamPF139124.9E-105579IPR007087Zinc finger, C2H2
PROSITE patternPS0002805777IPR007087Zinc finger, C2H2
SMARTSM003550.49109131IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.78E-7109131No hitNo description
PROSITE profilePS501579.827109136IPR007087Zinc finger, C2H2
PfamPF139123.5E-10109134IPR007087Zinc finger, C2H2
PROSITE patternPS000280111131IPR007087Zinc finger, C2H2
SuperFamilySSF576671.78E-7220247No hitNo description
SMARTSM003550.51225247IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.681225252IPR007087Zinc finger, C2H2
PfamPF139121.9E-10225249IPR007087Zinc finger, C2H2
PROSITE patternPS000280227247IPR007087Zinc finger, C2H2
PfamPF139126.2E-7280301IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MKHPRQEEEV SLALALSTDC SSAASDSSAA AAGGAARRKR ARRRSVVATS GEGEFVCKTC  60
SRAFPTFQAL GGHRTSHLRG RSNGLDLGAI GDKAIRLHRA ADKEHRDKHE CHICGLGFEM  120
GQALGGHMRR HREEMAAGGG GSSADDWVWR CDARPEGIAA EPPVLLELFA YSIRSVSFLT  180
MTKHPRDGEV ISLSLSLTLG AAADGGERKK PRRGSSPAAS GSGDFVCKTC SRAFPSFQAL  240
GGHRTSHLRG RHGLALGLAA ATAKETTKKV QEKPAAAAAI CGLGFEMGQA LGGHMRRHRE  300
EAAAAAAAVH APPVLLELFV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1044330.0AC104433.8 Oryza sativa chromosome 3 BAC OJ1754_E06 genomic sequence, complete sequence.
GenBankAK0688610.0AK068861.1 Oryza sativa Japonica Group cDNA clone:J013170H07, full insert sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankAY2864740.0AY286474.1 Oryza sativa (japonica cultivar-group) zinc finger protein ZFP182 mRNA, complete cds.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
GenBankCT8293160.0CT829316.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI011O15, full insert sequence.
GenBankCT8293170.0CT829317.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI016A02, full insert sequence.
GenBankCT8293180.0CT829318.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI021E01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629244.13e-98zinc finger protein ZAT12
TrEMBLA0A0E0P3600.0A0A0E0P360_ORYRU; Uncharacterized protein
STRINGORUFI03G40740.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130530117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46090.19e-19C2H2 family protein