PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ORUFI03G40350.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 241aa MW: 25487 Da PI: 10.8382 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.1 | 1e-18 | 81 | 130 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +gr++AeIrdp + +r +lg+f+taeeAa+a++aa +l+g ORUFI03G40350.1 81 RFRGVRQRP-WGRFAAEIRDP-----HlrRRLWLGTFDTAEEAAAAYDAASVRLRG 130 69*******.**********8.....556**********************99998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.81E-18 | 80 | 138 | No hit | No description |
SuperFamily | SSF54171 | 3.99E-20 | 81 | 138 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.6E-12 | 81 | 130 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.9E-32 | 81 | 144 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.642 | 81 | 138 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-28 | 81 | 139 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-10 | 82 | 93 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-10 | 104 | 120 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 241 aa Download sequence Send to blast |
MGTNPSLHEL AAGAAPRGRV VRILVRDADA TDSSSSEDEA VAVAQPRPRR RGKVGGGGGG 60 GGGVKRRVME AGAGEARPTA RFRGVRQRPW GRFAAEIRDP HLRRRLWLGT FDTAEEAAAA 120 YDAASVRLRG SSAATNFASV RCYSLPPELP KPTISPPEAA VRPITLPIGT AKPTLLPRVK 180 EEGESCGGRV KEEASSCEVQ VLAPEPMWTM ISGKRKKRSG CGTRVRAFHA VSACVEEVGG 240 A |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-18 | 82 | 137 | 6 | 62 | ATERF1 |
3gcc_A | 1e-18 | 82 | 137 | 6 | 62 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC133007 | 0.0 | AC133007.4 Oryza sativa chromosome 3 BAC OSJNBa0094J08 genomic sequence, complete sequence. | |||
GenBank | AC139172 | 0.0 | AC139172.2 Oryza sativa chromosome 3 BAC OSJNBb0042K11 genomic sequence, complete sequence. | |||
GenBank | AK068252 | 0.0 | AK068252.1 Oryza sativa Japonica Group cDNA clone:J013145D23, full insert sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. | |||
GenBank | CU406213 | 0.0 | CU406213.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C108D05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015628091.1 | 1e-170 | ethylene-responsive transcription factor CRF5 | ||||
Swissprot | Q9SUE3 | 8e-28 | CRF4_ARATH; Ethylene-responsive transcription factor CRF4 | ||||
TrEMBL | A0A0E0P316 | 1e-169 | A0A0E0P316_ORYRU; Uncharacterized protein | ||||
TrEMBL | Q84TW0 | 1e-169 | Q84TW0_ORYSJ; AP2 domain containing protein, expressed | ||||
STRING | ORUFI03G40350.1 | 1e-170 | (Oryza rufipogon) | ||||
STRING | OS03T0815800-01 | 1e-170 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11573 | 28 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G03800.1 | 3e-19 | ERF domain protein 10 |
Publications ? help Back to Top | |||
---|---|---|---|
|