PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI03G39090.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 402aa    MW: 42361 Da    PI: 9.89
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI03G39090.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.91.4e-30327385259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +D y+WrKYGqK++kgs++pr+YYrC+s+ +Cp++k+ver+++dp ++ +tYe+eHnh 
  ORUFI03G39090.1 327 SDNYSWRKYGQKPIKGSPHPRGYYRCSSKkDCPARKHVERCRSDPAMLLVTYENEHNHA 385
                      69**************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105336.1E-13285324IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.1E-32318387IPR003657WRKY domain
PROSITE profilePS5081131.031321387IPR003657WRKY domain
SuperFamilySSF1182907.32E-27324387IPR003657WRKY domain
SMARTSM007742.7E-37326386IPR003657WRKY domain
PfamPF031062.1E-26328384IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MLKNTHCSIA TPRVLEFYSV FAMDGVEEAN MAAVESSKKL VAILSKSGDP FRLMAAVAET  60
DEAVSRFGKV VTILSNRVGH ARARLGKRRS SPPVDPGCLM DHPLAAAASS PAPSNGRLHF  120
SSSAATASPS PATAAAASSA ANVTPAVVDR SLFLETTLLD LNSRGAPAPA ASMAAAAKNS  180
SKLAPAPMVN SSSSANHIQF QQPMKSFQFE QTPISDKFHI EMPRGVGGGG GKEVISFSFD  240
NSVCTSSAAT SFFTSISSQL ISMSDAATNS AAAAAAPTTK KPSSCARKAT ADDDAGGKCH  300
CPKKKKPREK KVVTVPAISD KVADIPSDNY SWRKYGQKPI KGSPHPRGYY RCSSKKDCPA  360
RKHVERCRSD PAMLLVTYEN EHNHAQPLDL SVVQQATANP QT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-203243871274WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0937130.0AC093713.6 Oryza sativa chromosome 3 BAC OSJNBa0094F01 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629206.10.0protein WRKY1 isoform X2
TrEMBLA0A0E0P2K70.0A0A0E0P2K7_ORYRU; Uncharacterized protein
STRINGORUFI03G39090.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127053036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.16e-38WRKY DNA-binding protein 11