PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI03G36640.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 291aa    MW: 31681.5 Da    PI: 8.0595
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI03G36640.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.12.1e-102072471055
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      rrRR+riN ++  L++l+P+      +K++ +++Le+Av+Y+k Lq
  ORUFI03G36640.1 207 RRRRERINGRLRILQKLVPNG-----TKVDISTMLEEAVHYVKFLQ 247
                      9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.97E-13195255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.488197246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-11201251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.4E-11203252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-7207247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.13E-7213251No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MSQDELQQPG QVQWTPAPEE KSEIAVQFFT APYPCQNGQL DHGEHHALGG IGACSSVHWQ  60
PDRGTCYWPP PLSGDGGGGS GSGSSGTGEG SYIGERCYYV GEPDVPIGLN LLVGDNDGAG  120
VVLRDAAPQA KRRTQAGHGG DLGRQKKKAR VSDKRNQESM QSGSCSDNES NCSQVNRRKV  180
DRVAGGGNGK VPARRRSATI AQSLYARRRR ERINGRLRIL QKLVPNGTKV DISTMLEEAV  240
HYVKFLQLQI KVEVQIVCHD QMLSSDELWM YAPIVYNGMD LGIDLNISPP R
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1193209RRRSATIAQSLYARRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0907130.0AC090713.6 Oryza sativa chromosome 3 BAC OSJNBa0002J24 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631804.10.0transcription factor BHLH089-like isoform X1
RefseqXP_015631806.10.0transcription factor PIF3 isoform X2
RefseqXP_025879771.10.0transcription factor BHLH089-like isoform X1
TrEMBLA0A0E0P1P70.0A0A0E0P1P7_ORYRU; Uncharacterized protein
TrEMBLA0A0P0W3G10.0A0A0P0W3G1_ORYSJ; Os03g0764200 protein
TrEMBLB8AKL60.0B8AKL6_ORYSI; Uncharacterized protein
STRINGORUFI03G36640.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144452123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.18e-35bHLH family protein