PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ORUFI03G36360.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 317aa MW: 33168.3 Da PI: 7.8588 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 18.1 | 5e-06 | 152 | 198 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ n+r r RR+r+ +++ L++l+ + +K + a++L +A YI+ L ORUFI03G36360.2 152 TTTNKRPRVRRERLGERIIALQQLVSPF-----GKSDTASVLHEALGYIRFL 198 678************************8.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.754 | 149 | 198 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-12 | 151 | 210 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-7 | 154 | 207 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-5 | 155 | 204 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.83E-5 | 155 | 203 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 317 aa Download sequence Send to blast |
MVKEEEIITE AAGARGYMEM LGLGEEAADY LMCLSPSSYL SSPAASTTTA VASPTCASYL 60 APHPYHHLLS FSGQDQYHGD DVFGLQYYGG DQVIPAVVPQ KSSPTTECSS SVSSMSSSPT 120 ATAISSSKSP AFKKKGSRGC DQRKATAPAA ATTTNKRPRV RRERLGERII ALQQLVSPFG 180 KSDTASVLHE ALGYIRFLHD QVQVLSSPYL QRLPPSARVP EQERGTPAAE EQPPALRPSD 240 LRSRGLCLVP ISCTEHVAGA GAGTGHGNGA DLWSVAAGMA KATATVTAAV ERSKEAAAAA 300 AATAALLRAD RPGQQLA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK072833 | 0.0 | AK072833.1 Oryza sativa Japonica Group cDNA clone:J023136C11, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015628341.1 | 0.0 | transcription factor bHLH113 | ||||
Refseq | XP_015628342.1 | 0.0 | transcription factor bHLH113 | ||||
TrEMBL | A0A0E0P1L3 | 0.0 | A0A0E0P1L3_ORYRU; Uncharacterized protein | ||||
TrEMBL | A2XM71 | 0.0 | A2XM71_ORYSI; Uncharacterized protein | ||||
TrEMBL | Q94HA7 | 0.0 | Q94HA7_ORYSJ; Helix-loop-helix DNA-binding domain containing protein, expressed | ||||
STRING | ORUFI03G36360.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS03T0759700-01 | 0.0 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G19500.1 | 2e-25 | bHLH family protein |