PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI03G36240.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 218aa    MW: 23508.6 Da    PI: 10.0676
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI03G36240.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1053.9e-333996259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
                     +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers++dp+vv++tYeg+H h+
  ORUFI03G36240.1 39 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSDDPSVVITTYEGQHCHH 96
                     8******************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.7E-342397IPR003657WRKY domain
SuperFamilySSF1182907.85E-293097IPR003657WRKY domain
PROSITE profilePS5081129.9643398IPR003657WRKY domain
SMARTSM007748.6E-393897IPR003657WRKY domain
PfamPF031062.3E-263996IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MFSNSLPAAA ATATAKKGQK RARQPRFAFM TKSEIDHLED GYRWRKYGQK AVKNSPFPRS  60
YYRCTNSKCT VKKRVERSSD DPSVVITTYE GQHCHHTASF QRGVGGAAVA AHIHGAAAVA  120
LAEQMSAFVS PPPQPHMLYG LPRLHPPSSE TAVSCSMPTT TSLQELNNGE GLQRPGYNNS  180
PQAAVTIAQR PPSPSVPPAV SFDKGLLDDI VPPGVRLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-262895774Probable WRKY transcription factor 4
2lex_A1e-262895774Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00067PBMTransfer from AT1G69310Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3418590.0AY341859.1 Oryza sativa (japonica cultivar-group) WRKY19 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631421.11e-155probable WRKY transcription factor 57
RefseqXP_015631422.11e-155probable WRKY transcription factor 57
TrEMBLA0A0E0P1J51e-161A0A0E0P1J5_ORYRU; Uncharacterized protein
STRINGORUFI03G36240.11e-162(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21253796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.21e-53WRKY DNA-binding protein 57