PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI03G34980.5
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 299aa    MW: 32907.6 Da    PI: 5.2973
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI03G34980.5genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.35.6e-08132176554
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      h +rEr+RR+++ ++++ L  ++ ++      K +K +i++ A  YI++L
  ORUFI03G34980.5 132 HMMRERQRREKLSQSYADLYAMVSSR-----SKGDKNSIVQSAAIYIHEL 176
                      889**********************8.....6999999*********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.738127176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.18E-12127197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.00E-7131177No hitNo description
Gene3DG3DSA:4.10.280.104.4E-9132195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-5132176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-4133182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006302Biological Processdouble-strand break repair
GO:0006310Biological ProcessDNA recombination
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008022Molecular Functionprotein C-terminus binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MQMESYYGAF HADEAAFFFP HHVPASPELP FGLIASPEPE PEPEQAAAEA RQSAFQEYGG  60
AVHAGAPAAA GAVTTGGTNI HRRVMDVLGR MGGGGGGGEK GEGEEMEEEE EVPQRRRRGQ  120
GADVESSRGF RHMMRERQRR EKLSQSYADL YAMVSSRSKG DKNSIVQSAA IYIHELKVAR  180
DQLQRRNEEL KAQIMGHDEQ QPCVTVQFEV DEPSSSIDSM IAALRRLKGM SVKARGIRSS  240
MSGNRLWTEM NVETTIAACE VEKAVEEALK EVERNQPDSD APFPGSKGWT QTSHVQNVF
Functional Description ? help Back to Top
Source Description
UniProtMay act on an initial response of jasmonate-regulated gene expression toward drought tolerance as part of a BHLH148-TIFY11D/JAZ12-COI1A complex. {ECO:0000269|PubMed:21332845}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), methyl jasmonate (MeJA), drought, cold, salt and wounding. {ECO:0000269|PubMed:21332845}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0717340.0AK071734.1 Oryza sativa Japonica Group cDNA clone:J023108N23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631231.10.0transcription factor BHLH148
SwissprotQ75KV90.0BH148_ORYSJ; Transcription factor BHLH148
TrEMBLA0A0E0P1320.0A0A0E0P132_ORYRU; Uncharacterized protein
STRINGOS03T0741100-010.0(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.18e-20bHLH family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]