PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI03G34210.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 335aa MW: 37168.7 Da PI: 5.6343 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.6 | 1.4e-10 | 164 | 212 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq ORUFI03G34210.1 164 NSHSLAERLRRKKISERMKLLQDLVPGC----SKITGKAVMLDEIINYVQSLQ 212 58**************************....899*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 7.20E-11 | 159 | 216 | No hit | No description |
SuperFamily | SSF47459 | 1.09E-16 | 159 | 228 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.447 | 161 | 211 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.9E-16 | 161 | 229 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.8E-8 | 164 | 212 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.6E-10 | 167 | 217 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MLSRGQLEMY SGQQSDQCPG PNSGKEFLEV NWDSVALHQK MGYNSGAFGF QAYPMVLEDR 60 EGLYRSPNGT FCQNIQLSDD HSSGAKRRKG IDDHIALLNP SASSRIQNVG DQQTEVSSQQ 120 ERISMEEDNQ KSCSKMQSKE DSSDGDGTKE DYVHVRAKRG QATNSHSLAE RLRRKKISER 180 MKLLQDLVPG CSKITGKAVM LDEIINYVQS LQRQVEFLSM KLATVNPELS FDIEQILSKQ 240 MMLSQDRHLA FYGVDPGSSA LVAHFNQGIM QPEMLCNVSN PADVLQGTTI QDISTVNQIP 300 AMWEGLQNIP HLNYNPGGAM AEGSTNNSGS MKIEK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00135 | DAP | Transfer from AT1G10120 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015632666.1 | 0.0 | transcription factor bHLH74 | ||||
Refseq | XP_015632667.1 | 0.0 | transcription factor bHLH74 | ||||
Refseq | XP_025879964.1 | 0.0 | transcription factor bHLH74 | ||||
Refseq | XP_025879965.1 | 0.0 | transcription factor bHLH74 | ||||
TrEMBL | A0A0E0P0T0 | 0.0 | A0A0E0P0T0_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI03G34210.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6033 | 36 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10120.1 | 2e-54 | bHLH family protein |