PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI03G32570.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | TCP | ||||||||
Protein Properties | Length: 320aa MW: 33887.3 Da PI: 7.8297 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 157.9 | 5.7e-49 | 44 | 206 | 1 | 136 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg..... 88 aa++kdrhski+T++g+RdRR+Rls+++a++fF+Lqd+LGfdk+skt++WLl+++k+ai e++++ +++s c e++sss s++ ++++ ORUFI03G32570.1 44 AAARKDRHSKISTAGGMRDRRMRLSLDVARKFFALQDMLGFDKASKTVQWLLNMSKAAIREIMSD--DASSVCeEDGSSSLSVDGKQQQhsnpa 135 589**************************************************************..666678877777777764444445678 PP TCP 89 .......................kaaksaakskksqksaasalnlakesrakarararertrekmriknkl 136 k +++aa++k++++ a+++ ++kesrakar+rarert+ek+r+++++ ORUFI03G32570.1 136 drgggagdhkgaahghsdgkkpaKPRRAAANPKPPRRLANAHPVPDKESRAKARERARERTKEKNRMRWVT 206 8899999999999*********77777777**************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 4.8E-45 | 46 | 202 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 34.132 | 47 | 105 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 12.264 | 182 | 199 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048831 | Biological Process | regulation of shoot system development |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MHPFMDLELE PHGQQLAAAE EDGAGGQGVD AGVPFGVDGA AAAAAARKDR HSKISTAGGM 60 RDRRMRLSLD VARKFFALQD MLGFDKASKT VQWLLNMSKA AIREIMSDDA SSVCEEDGSS 120 SLSVDGKQQQ HSNPADRGGG AGDHKGAAHG HSDGKKPAKP RRAAANPKPP RRLANAHPVP 180 DKESRAKARE RARERTKEKN RMRWVTLASA ISVEAATAAA AAGEDKSPTS PSNNLNHSSS 240 TNLVSTELED GSSSARHNGV GVSGGRMQEI SAASEASDVI MAFANGGAYG DSGSYYLQQQ 300 HQQDQWELGG VVYANSRHYC |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that functions as a negative regulator of lateral branching, presumably through its expression in axillary buds (PubMed:12581309, PubMed:20547591). Involved in the fine tuning of shoot branching. May function as an integrator of multiple signaling pathways to regulate the development of axillary buds. Works partially downstream of strigolactones to inhibit bud outgrowth (PubMed:20547591). Binds to MADS57 to suppress the negative regulation of D14 by MADS57 and balance the expression of D14 for tillering (PubMed:23463009). {ECO:0000269|PubMed:12581309, ECO:0000269|PubMed:20547591, ECO:0000269|PubMed:23463009}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB088343 | 0.0 | AB088343.1 Oryza sativa Japonica Group OsTB1 gene for teosinte branched1 protein, complete cds. | |||
GenBank | AC091775 | 0.0 | AC091775.10 Oryza sativa chromosome 3 BAC OSJNBa0004G17 genomic sequence, complete sequence. | |||
GenBank | AK107083 | 0.0 | AK107083.1 Oryza sativa Japonica Group cDNA clone:002-121-G01, full insert sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015630237.1 | 0.0 | transcription factor TB1-like | ||||
Swissprot | Q8LN68 | 0.0 | TB1_ORYSJ; Transcription factor TB1 | ||||
TrEMBL | A0A0E0P079 | 0.0 | A0A0E0P079_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI03G32570.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7253 | 36 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68800.1 | 4e-23 | TCP domain protein 12 |