PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI03G27310.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Protein Properties

Length: 756aa MW: 84301 Da PI: 6.8289

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI03G27310.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	56.7	4.3e-18	42	122	14	99
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +++p +fa++++g s + l+++sg++W++ + y+ + g+ vl++GWkeFv+ang++e+D ++F+++g s+f v +f+ ORUFI03G27310.1 42 ESMIVPSRFANNFNGH--ISEVVNLKSPSGKTWSIGVAYSDT-GELVLRSGWKEFVDANGVQENDCLLFRYSGVSSF--DVLIFDP 122 45899***888666..6779***********65555.469************************99999..8888875 PP
2	B3	36.5	8.9e-12	302	373	15	84
-EE--HHH.HTT---..--SEEEEEETTS....-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 15 rlvlpkkfaeehggkkeesktltledesg....rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 + ++ +fa ++ g+ + +++++e g +W v++ r +s++ + ++GW++F+++ngL + D+++F+l ORUFI03G27310.1 302 TVGVSPEFAGRYLGP-AMAREVVMERGGGggggDQWHVRFVRRESSRG-FHGTGWRRFARDNGLLAHDVCLFEL 373 556778888888444.45668999998778999*****65555555.6788*****************96 PP
3	B3	51.3	2.1e-16	423	501	17	99
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 ++p +fa++++g s ++ l+++sg++W++ + +++ + vl+ GWkeFv+ ng++egD ++F+++g s+f v +f+ ORUFI03G27310.1 423 TVPARFANNFNGH--ISEEVNLRSPSGETWSIGV--ANSDAGeLVLQPGWKEFVDGNGIEEGDCLLFRYSGVsSSF--DVLIFDP 501 6899*888666..6779***********..5555445*************************987887..8888875 PP
4	B3	36.7	7.7e-12	638	718	5	85
-..-HHHHT..T-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 5 ltpsdvlks..grlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 +s+v +s +++ ++ +fa ++ g ++ + +++le ++g +W v + +r++ ++++ ++GW++F+ +n+L + D+++F+l+ ORUFI03G27310.1 638 IHSSHVRSSkyCIVGVSPEFAGKYlGAVE-R--EVVLERaSRGGEWHVPFVHRQNTRGFY-GAGWRQFAGDNRLVAHDVCLFELT 718 4445554445599999******76563.3..6999998999***9999999986.77*****************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	4.32E-23	28	128	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	6.1E-23	29	125	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	15.199	29	123	IPR003340	B3 DNA binding domain
SMART	SM01019	1.4E-11	32	123	IPR003340	B3 DNA binding domain
CDD	cd10017	7.31E-19	40	121	No hit	No description
Pfam	PF02362	2.6E-15	42	121	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	6.9E-14	280	374	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	5.49E-13	280	373	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	7.06E-11	284	373	No hit	No description
SMART	SM01019	0.0095	286	393	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.898	288	390	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.3E-9	302	373	IPR003340	B3 DNA binding domain
SMART	SM01019	0.0047	418	502	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	3.6E-19	422	504	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.60E-16	423	500	No hit	No description
SuperFamily	SSF101936	1.1E-17	423	507	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	3.5E-13	423	500	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	13.719	424	502	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	1.96E-15	628	718	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	5.1E-16	628	745	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.03E-11	632	717	No hit	No description
SMART	SM01019	0.011	634	738	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.236	634	748	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.4E-9	646	718	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 756 aa Download sequence Send to blast
MGMLKIGKNC SVCKEWQEHC YWSHMADDCK HFLTYMVGDF TESMIVPSRF ANNFNGHISE 60 VVNLKSPSGK TWSIGVAYSD TGELVLRSGW KEFVDANGVQ ENDCLLFRYS GVSSFDVLIF 120 DPSGCEKASP HFVENRGFGR EEKSAGAEGG GRDGDKNGHH QHQLEMTPHK NSSSPCIIEM 180 KWGRNQSRLC IIDMYAAMGI IVVTTNIGTY MHERACLAEQ DHREEKKEGD DEDEDEDEDE 240 DEDKDGEDRY YFCRHGGRVT EYNLSKGDKE EISRVPVPVE PGNPVLVKVI HASHLLSSRY 300 STVGVSPEFA GRYLGPAMAR EVVMERGGGG GGGDQWHVRF VRRESSRGFH GTGWRRFARD 360 NGLLAHDVCL FELRLVDGAG AGDRLRRRPR PTMAVHVLRR ARTAAFARSG KNTATGAIWP 420 TTTVPARFAN NFNGHISEEV NLRSPSGETW SIGVANSDAG ELVLQPGWKE FVDGNGIEEG 480 DCLLFRYSGV SSSFDVLIFD PSGCEKASPH FVGSHGFGRA ENSAGAEQGG RNGRRTPPIV 540 DGDNGHRHHL EMTLHRNSCR SIPRACKRSL FSDETEAKEN DGEDEDVVAA AEGGRYGEYY 600 FSRHGRVAEY NLREEDREEI SRVPVPVQPG NPVFVQVIHS SHVRSSKYCI VGVSPEFAGK 660 YLGAVEREVV LERASRGGEW HVPFVHRQNT RGFYGAGWRQ FAGDNRLVAH DVCLFELTMV 720 DAAASGGGNR RRRWSRRPTM TVHVLRRVRG RFVLLR

Sequence ? help Back to Top

Protein Sequence Length: 756 aa Download sequence Send to blast

MGMLKIGKNC SVCKEWQEHC YWSHMADDCK HFLTYMVGDF TESMIVPSRF ANNFNGHISE  60
VVNLKSPSGK TWSIGVAYSD TGELVLRSGW KEFVDANGVQ ENDCLLFRYS GVSSFDVLIF  120
DPSGCEKASP HFVENRGFGR EEKSAGAEGG GRDGDKNGHH QHQLEMTPHK NSSSPCIIEM  180
KWGRNQSRLC IIDMYAAMGI IVVTTNIGTY MHERACLAEQ DHREEKKEGD DEDEDEDEDE  240
DEDKDGEDRY YFCRHGGRVT EYNLSKGDKE EISRVPVPVE PGNPVLVKVI HASHLLSSRY  300
STVGVSPEFA GRYLGPAMAR EVVMERGGGG GGGDQWHVRF VRRESSRGFH GTGWRRFARD  360
NGLLAHDVCL FELRLVDGAG AGDRLRRRPR PTMAVHVLRR ARTAAFARSG KNTATGAIWP  420
TTTVPARFAN NFNGHISEEV NLRSPSGETW SIGVANSDAG ELVLQPGWKE FVDGNGIEEG  480
DCLLFRYSGV SSSFDVLIFD PSGCEKASPH FVGSHGFGRA ENSAGAEQGG RNGRRTPPIV  540
DGDNGHRHHL EMTLHRNSCR SIPRACKRSL FSDETEAKEN DGEDEDVVAA AEGGRYGEYY  600
FSRHGRVAEY NLREEDREEI SRVPVPVQPG NPVFVQVIHS SHVRSSKYCI VGVSPEFAGK  660
YLGAVEREVV LERASRGGEW HVPFVHRQNT RGFYGAGWRQ FAGDNRLVAH DVCLFELTMV  720
DAAASGGGNR RRRWSRRPTM TVHVLRRVRG RFVLLR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	382	387	DRLRRR
2	383	389	RLRRRPR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK108660	0.0	AK108660.1 Oryza sativa Japonica Group cDNA clone:002-148-F01, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015628568.1	0.0	B3 domain-containing protein Os03g0622200
Swissprot	Q10GM3	0.0	Y3222_ORYSJ; B3 domain-containing protein Os03g0622200
TrEMBL	A0A0E0NYD4	0.0	A0A0E0NYD4_ORYRU; Uncharacterized protein
STRING	ORUFI03G27310.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP562	34	179

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33280.1	2e-27	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]