PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI03G27250.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | B3 | ||||||||
Protein Properties | Length: 920aa MW: 105823 Da PI: 10.0722 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 66.1 | 5.1e-21 | 105 | 194 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ffkv+ +++ ++++p kfae++ + + t++l+ ++g++ +v + +k+s++ vltkGW eF++++++k gDf+vF+++g+s+f v ORUFI03G27250.1 105 FFKVM--IGGFRR-QMTIPYKFAENFRDQ--IQGTIKLKARNGNTCSVLV--DKCSNKLVLTKGWAEFANSHDIKMGDFLVFRYTGNSQF--EV 189 56666..445555.6********888655..4459***************..**************************************..99 PP EEE-S CS B3 95 kvfrk 99 k+f+ ORUFI03G27250.1 190 KIFDP 194 99986 PP | |||||||
2 | B3 | 35.7 | 1.6e-11 | 241 | 321 | 1 | 83 |
EEEE-..-HHHHT.T-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEEE CS B3 1 ffkvltpsdvlks.grlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvFk 83 f+ v+++s+v+++ + + +++k+a+e+ gg+ ++lt +++g++W+vk++++k++ r +l+kGW++F ++n+L+ D + ++ ORUFI03G27250.1 241 FVAVMKKSNVTRQpCYVAISRKYANEYfpGGD----QMLT-LQRHGKRWQVKFCISKRKLR-MLSKGWRKFTRDNELQgIVDCMKLT 321 77889999999999999**********76555....3455.667*********77666666.89*************9555655555 PP | |||||||
3 | B3 | 66.2 | 4.9e-21 | 352 | 433 | 12 | 99 |
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ++r+++p kfa++++g+ skt++le +sg +++v++ +kk + vl++GW++Fv+a++L+ gDf+vFk++g +f l v +f+ ORUFI03G27250.1 352 FHKRMTIPDKFARHFKGV--ISKTIKLEPRSGYTFDVQV--TKKLNILVLGSGWESFVNAHDLNMGDFLVFKYNG--DFLLQVLIFDP 433 4568********999999..899****************..*******************************976..88889999985 PP | |||||||
4 | B3 | 57.4 | 2.6e-18 | 626 | 712 | 2 | 97 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 fkv+ ++ r+++p++f++ + gk ++t++l+ ++g +++v++ +k+ g++ l++GWk Fv a++L+ gDf+vF++dg s+ +v ORUFI03G27250.1 626 FKVM--IGRFR-ERMIIPNEFLQYFRGK--IPRTIKLQLRDGCTYDVQV--TKNLGKISLQSGWKAFVTAHDLQMGDFLVFSYDGISKL--KVL 710 5555..44444.57********555666..66789999999********..********************************986555..777 PP EE CS B3 96 vf 97 +f ORUFI03G27250.1 711 IF 712 77 PP | |||||||
5 | B3 | 47.5 | 3.1e-15 | 836 | 919 | 12 | 99 |
HTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 12 ksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ks+ + + +++a+ + ke + +t +++g+ Wev ++ +k ++ l++GW++F+++n+L++gD+++F+l +++e +++v+++ k ORUFI03G27250.1 836 KSQTVDICREYADVYlP-FKELN--MT-LQRHGKNWEVLCR-TKDTRTKRLSTGWSRFAQENNLQVGDICLFELLKKKEYSMNVHIIPK 919 56667777888877742.22333..44.348*********4.44444478***********************9999999999999865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 6.67E-25 | 99 | 197 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.7E-24 | 99 | 197 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.59 | 102 | 195 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.23E-20 | 104 | 193 | No hit | No description |
SMART | SM01019 | 1.5E-13 | 105 | 195 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.8E-19 | 105 | 193 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.6E-24 | 229 | 312 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.12E-15 | 234 | 312 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.11E-13 | 239 | 312 | No hit | No description |
SMART | SM01019 | 8.9E-4 | 241 | 336 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.5E-10 | 241 | 312 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.122 | 242 | 336 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.3E-25 | 336 | 447 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.37E-23 | 338 | 436 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.915 | 341 | 434 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.67E-20 | 342 | 432 | No hit | No description |
SMART | SM01019 | 1.4E-11 | 344 | 434 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-18 | 344 | 432 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.3E-5 | 522 | 588 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.69E-22 | 618 | 717 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.704 | 622 | 715 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.0E-12 | 625 | 715 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.9E-16 | 625 | 712 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 9.20E-21 | 625 | 712 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 3.9E-21 | 635 | 723 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-20 | 818 | 917 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.08E-18 | 819 | 917 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.266 | 825 | 920 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.49E-13 | 827 | 918 | No hit | No description |
SMART | SM01019 | 5.6E-8 | 828 | 920 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-13 | 835 | 919 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 920 aa Download sequence Send to blast |
MRVENKRGNR SWGTDAKRTH PNSIFNQLVR YGYIGTGFPD MNCSLTWSLI GGPSLPSFFP 60 SAHLLLSLAL FFFLCIQSNH RMSKSGCERC RGRGFWDTDD QDTYFFKVMI GGFRRQMTIP 120 YKFAENFRDQ IQGTIKLKAR NGNTCSVLVD KCSNKLVLTK GWAEFANSHD IKMGDFLVFR 180 YTGNSQFEVK IFDPSGCVKA ASHITEHASS SEDDQETPTA EVHRMKVEEM VRAIHSNHPV 240 FVAVMKKSNV TRQPCYVAIS RKYANEYFPG GDQMLTLQRH GKRWQVKFCI SKRKLRMLSK 300 GWRKFTRDNE LQGIVDCMKL TRCGQKMRKL NTRSTARDDQ EKYFFKVMIG DFHKRMTIPD 360 KFARHFKGVI SKTIKLEPRS GYTFDVQVTK KLNILVLGSG WESFVNAHDL NMGDFLVFKY 420 NGDFLLQVLI FDPSGCEKST SCSMENAIDH VGQGWKEHND ISTSYHDQPK GNKHWMQKDS 480 SSKGNKIGNT RSSNTPSKFS GCILPRGTCL PVVQEKKMKE KIQAIHSKTP MYGNVMTKCN 540 VSGSPCVLEI TQLYDDAYLP FNNGQELMLR HRDKSWKVRF YRFKNKSRKL TQASSLYKMR 600 RPGARCREGH AHFNGNHIDG QYKNFFKVMI GRFRERMIIP NEFLQYFRGK IPRTIKLQLR 660 DGCTYDVQVT KNLGKISLQS GWKAFVTAHD LQMGDFLVFS YDGISKLKVL IFGPSGCEKV 720 HSRPTLKNAT HCGEKWEEPL HISSNSHDLP VKSPQNVSKS EKQWDSSEQE NDTANIEEVA 780 LQGDDLQGHP VLNCILPKHT RLTDMQKQQL ESKVGAIHSE IPIYGCILRK SRVHGKSQTV 840 DICREYADVY LPFKELNMTL QRHGKNWEVL CRTKDTRTKR LSTGWSRFAQ ENNLQVGDIC 900 LFELLKKKEY SMNVHIIPKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC097280 | 0.0 | AC097280.8 Oryza sativa chromosome 3 BAC OSJNBb0111B07 genomic sequence, complete sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025880058.1 | 0.0 | putative B3 domain-containing protein Os03g0621600 isoform X1 | ||||
Swissprot | Q851V5 | 0.0 | Y3216_ORYSJ; Putative B3 domain-containing protein Os03g0621600 | ||||
TrEMBL | A0A0E0NYC4 | 0.0 | A0A0E0NYC4_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI03G27250.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2901 | 29 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 4e-23 | B3 family protein |