PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI03G27250.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 920aa    MW: 105823 Da    PI: 10.0722
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI03G27250.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.15.1e-21105194199
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      ffkv+     +++ ++++p kfae++  +   + t++l+ ++g++ +v +  +k+s++ vltkGW eF++++++k gDf+vF+++g+s+f   v
  ORUFI03G27250.1 105 FFKVM--IGGFRR-QMTIPYKFAENFRDQ--IQGTIKLKARNGNTCSVLV--DKCSNKLVLTKGWAEFANSHDIKMGDFLVFRYTGNSQF--EV 189
                      56666..445555.6********888655..4459***************..**************************************..99 PP

                      EEE-S CS
               B3  95 kvfrk 99 
                      k+f+ 
  ORUFI03G27250.1 190 KIFDP 194
                      99986 PP

2B335.71.6e-11241321183
                      EEEE-..-HHHHT.T-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEEE CS
               B3   1 ffkvltpsdvlks.grlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvFk 83 
                      f+ v+++s+v+++ + + +++k+a+e+  gg+    ++lt  +++g++W+vk++++k++ r +l+kGW++F ++n+L+   D + ++
  ORUFI03G27250.1 241 FVAVMKKSNVTRQpCYVAISRKYANEYfpGGD----QMLT-LQRHGKRWQVKFCISKRKLR-MLSKGWRKFTRDNELQgIVDCMKLT 321
                      77889999999999999**********76555....3455.667*********77666666.89*************9555655555 PP

3B366.24.9e-213524331299
                      HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                       ++r+++p kfa++++g+   skt++le +sg +++v++  +kk +  vl++GW++Fv+a++L+ gDf+vFk++g  +f l v +f+ 
  ORUFI03G27250.1 352 FHKRMTIPDKFARHFKGV--ISKTIKLEPRSGYTFDVQV--TKKLNILVLGSGWESFVNAHDLNMGDFLVFKYNG--DFLLQVLIFDP 433
                      4568********999999..899****************..*******************************976..88889999985 PP

4B357.42.6e-18626712297
                      EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
               B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                      fkv+     ++  r+++p++f++ + gk   ++t++l+ ++g +++v++  +k+ g++ l++GWk Fv a++L+ gDf+vF++dg s+   +v 
  ORUFI03G27250.1 626 FKVM--IGRFR-ERMIIPNEFLQYFRGK--IPRTIKLQLRDGCTYDVQV--TKNLGKISLQSGWKAFVTAHDLQMGDFLVFSYDGISKL--KVL 710
                      5555..44444.57********555666..66789999999********..********************************986555..777 PP

                      EE CS
               B3  96 vf 97 
                      +f
  ORUFI03G27250.1 711 IF 712
                      77 PP

5B347.53.1e-158369191299
                      HTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  12 ksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      ks+ + + +++a+ +    ke +  +t  +++g+ Wev ++ +k  ++  l++GW++F+++n+L++gD+++F+l +++e +++v+++ k
  ORUFI03G27250.1 836 KSQTVDICREYADVYlP-FKELN--MT-LQRHGKNWEVLCR-TKDTRTKRLSTGWSRFAQENNLQVGDICLFELLKKKEYSMNVHIIPK 919
                      56667777888877742.22333..44.348*********4.44444478***********************9999999999999865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.67E-2599197IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.7E-2499197IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.59102195IPR003340B3 DNA binding domain
CDDcd100172.23E-20104193No hitNo description
SMARTSM010191.5E-13105195IPR003340B3 DNA binding domain
PfamPF023625.8E-19105193IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.6E-24229312IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-15234312IPR015300DNA-binding pseudobarrel domain
CDDcd100178.11E-13239312No hitNo description
SMARTSM010198.9E-4241336IPR003340B3 DNA binding domain
PfamPF023628.5E-10241312IPR003340B3 DNA binding domain
PROSITE profilePS508639.122242336IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.3E-25336447IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.37E-23338436IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.915341434IPR003340B3 DNA binding domain
CDDcd100172.67E-20342432No hitNo description
SMARTSM010191.4E-11344434IPR003340B3 DNA binding domain
PfamPF023621.3E-18344432IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.3E-5522588IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-22618717IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.704622715IPR003340B3 DNA binding domain
SMARTSM010193.0E-12625715IPR003340B3 DNA binding domain
PfamPF023623.9E-16625712IPR003340B3 DNA binding domain
CDDcd100179.20E-21625712No hitNo description
Gene3DG3DSA:2.40.330.103.9E-21635723IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-20818917IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.08E-18819917IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.266825920IPR003340B3 DNA binding domain
CDDcd100173.49E-13827918No hitNo description
SMARTSM010195.6E-8828920IPR003340B3 DNA binding domain
PfamPF023621.2E-13835919IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 920 aa     Download sequence    Send to blast
MRVENKRGNR SWGTDAKRTH PNSIFNQLVR YGYIGTGFPD MNCSLTWSLI GGPSLPSFFP  60
SAHLLLSLAL FFFLCIQSNH RMSKSGCERC RGRGFWDTDD QDTYFFKVMI GGFRRQMTIP  120
YKFAENFRDQ IQGTIKLKAR NGNTCSVLVD KCSNKLVLTK GWAEFANSHD IKMGDFLVFR  180
YTGNSQFEVK IFDPSGCVKA ASHITEHASS SEDDQETPTA EVHRMKVEEM VRAIHSNHPV  240
FVAVMKKSNV TRQPCYVAIS RKYANEYFPG GDQMLTLQRH GKRWQVKFCI SKRKLRMLSK  300
GWRKFTRDNE LQGIVDCMKL TRCGQKMRKL NTRSTARDDQ EKYFFKVMIG DFHKRMTIPD  360
KFARHFKGVI SKTIKLEPRS GYTFDVQVTK KLNILVLGSG WESFVNAHDL NMGDFLVFKY  420
NGDFLLQVLI FDPSGCEKST SCSMENAIDH VGQGWKEHND ISTSYHDQPK GNKHWMQKDS  480
SSKGNKIGNT RSSNTPSKFS GCILPRGTCL PVVQEKKMKE KIQAIHSKTP MYGNVMTKCN  540
VSGSPCVLEI TQLYDDAYLP FNNGQELMLR HRDKSWKVRF YRFKNKSRKL TQASSLYKMR  600
RPGARCREGH AHFNGNHIDG QYKNFFKVMI GRFRERMIIP NEFLQYFRGK IPRTIKLQLR  660
DGCTYDVQVT KNLGKISLQS GWKAFVTAHD LQMGDFLVFS YDGISKLKVL IFGPSGCEKV  720
HSRPTLKNAT HCGEKWEEPL HISSNSHDLP VKSPQNVSKS EKQWDSSEQE NDTANIEEVA  780
LQGDDLQGHP VLNCILPKHT RLTDMQKQQL ESKVGAIHSE IPIYGCILRK SRVHGKSQTV  840
DICREYADVY LPFKELNMTL QRHGKNWEVL CRTKDTRTKR LSTGWSRFAQ ENNLQVGDIC  900
LFELLKKKEY SMNVHIIPKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0972800.0AC097280.8 Oryza sativa chromosome 3 BAC OSJNBb0111B07 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880058.10.0putative B3 domain-containing protein Os03g0621600 isoform X1
SwissprotQ851V50.0Y3216_ORYSJ; Putative B3 domain-containing protein Os03g0621600
TrEMBLA0A0E0NYC40.0A0A0E0NYC4_ORYRU; Uncharacterized protein
STRINGORUFI03G27250.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29012985
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.14e-23B3 family protein