PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI03G27200.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 1169aa    MW: 132912 Da    PI: 9.2627
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI03G27200.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.71.4e-15130211997
                      HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
               B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                       ++  + +++p+kf++++gg    s+t+ l +++g  + vk+  + + ++++l+ GW+ Fv+a++++e+D+++F+++++s+f   v ++
  ORUFI03G27200.1 130 ANF-GHSMTIPNKFLDHFGGT--LSRTIELVSPKGIMYIVKV--TEHMNKTILQCGWEAFVDAHHIEENDSLLFRHIENSRF--EVLIL 211
                      334.456********888877..899****************..*********************************99999..66655 PP
2B361.11.9e-19343442198
                      EEEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE CS
               B3   1 ffkvltpsdvlks.grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sef 90 
                      f+ ++++s+v+++ ++lv+pk++a++h   + es+t+tl+   ++++W   + +rk +++y+l ++Wk+Fv++n++kegD+++F+l+  +  ef
  ORUFI03G27200.1 343 FVAIMKHSNVNSRrACLVIPKRYASAHF--PLESQTITLQRqGKNKKWYPMFYIRKDGSGYMLYGCWKNFVRDNHVKEGDMCIFHLTkFTgGEF 434
                      6677888888887788***********6..446779999985666****99977999999*************************874445666 PP

                      ..EEEEE- CS
               B3  91 elvvkvfr 98 
                        +v+++r
  ORUFI03G27200.1 435 GATVHLLR 442
                      66777666 PP
3B349.38.8e-16518599889
                      -HHHHT..T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
               B3   8 sdvlks..grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrse 89 
                      s+v++    ++++ ++fa+++ +++ e++   l++ +++ W+vk+  r +sg   ++t+GW++Fv++n+L+  D+++F+l+++++
  ORUFI03G27200.1 518 SNVGTDglYIIIFGRQFATRY-LPEGEQTLTLLMTGKSNAWQVKM--RPRSGDaQMITTGWRHFVHDNHLQIEDICLFQLMNDET 599
                      555555112346689***999.3444455566777899*******..77777779************************998754 PP
4B354.91.6e-17675752589
                      -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
               B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                      +  s +++++ +++p+kf++++ggk   s+t+ le+++g+++ vk+  +k+ +++vl+ GW+ Fv+a++++e+D+++F+++++s+
  ORUFI03G27200.1 675 M--SANFEHS-MIIPNKFLDQFGGK--ISRTVELESPKGNVYVVKV--SKHMNKTVLQCGWEAFVDAHQIEENDSLLFRHIENSR 752
                      4..5556655.***********999..888****************..*******************************998755 PP
5B344.52.7e-14856954399
                      EE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE.. CS
               B3   3 kvltpsdvlks.grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefel 92 
                      +++++s+v+++ + lv+ k++a ++   +++s+t+tl+   ++r+W  k+ +rk + +y+l + W +Fv+ n++kegD+++F+l+  + ++f+ 
  ORUFI03G27200.1 856 TTMKHSNVNSHhASLVIAKHYACAYF--PHTSQTITLKWhGKNRKWHPKFYIRKDQVGYILHGRWIDFVRHNHVKEGDICIFHLKnFNgRKFRA 947
                      678888888886789*******8996..456779999985788*******77888888*************************98666688888 PP

                      EEEEE-S CS
               B3  93 vvkvfrk 99 
                      +v+++r+
  ORUFI03G27200.1 948 TVHLLRE 954
                      8888875 PP
6B354.22.7e-1710721164898
                       -HHHHT..T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS..SEE..E CS
               B3    8 sdvlks..grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr..sefelv 93  
                       s+v++    +++l ++fa ++  ++ e +tltl +  +g+ W+vk+  r +sg   ++t GW++Fv++n+L++ D+++F+l+++  ++  ++
  ORUFI03G27200.1 1072 SNVGTDglYIITLGRQFAIRYL-PEGE-QTLTLLTtGTGKAWQVKM--RPRSGDaRMFTLGWRDFVRDNRLQTEDICLFQLMKNseRGLAMK 1159
                       55555522345899****9993.3334.45555554999*******..777776689***********************997734455566 PP

                       EEEE- CS
               B3   94 vkvfr 98  
                       v+++r
  ORUFI03G27200.1 1160 VHIIR 1164
                       66666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.49E-20120219IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-18121216IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.139121214IPR003340B3 DNA binding domain
CDDcd100171.20E-14122212No hitNo description
SMARTSM010194.4E-7124214IPR003340B3 DNA binding domain
PfamPF023626.9E-14129210IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-20335428IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.83E-23337430IPR015300DNA-binding pseudobarrel domain
CDDcd100176.50E-22341442No hitNo description
SMARTSM010191.2E-7343445IPR003340B3 DNA binding domain
PfamPF023621.4E-19343443IPR003340B3 DNA binding domain
PROSITE profilePS5086313.197344444IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-19503601IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.03E-16504600IPR015300DNA-binding pseudobarrel domain
CDDcd100172.27E-12509600No hitNo description
PROSITE profilePS5086310.8511608IPR003340B3 DNA binding domain
SMARTSM010190.0014511606IPR003340B3 DNA binding domain
PfamPF023624.6E-15515599IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-16666752IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-17667759IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.35668761IPR003340B3 DNA binding domain
CDDcd100177.58E-15669753No hitNo description
SMARTSM010196.4E-6671758IPR003340B3 DNA binding domain
PfamPF023621.3E-15676753IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-17846950IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.88E-19849950IPR015300DNA-binding pseudobarrel domain
CDDcd100174.17E-19852943No hitNo description
SMARTSM010190.0015854955IPR003340B3 DNA binding domain
PROSITE profilePS5086311.166855955IPR003340B3 DNA binding domain
PfamPF023622.4E-13855954IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-2110571166IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.93E-2010581166IPR015300DNA-binding pseudobarrel domain
CDDcd100171.63E-1410631164No hitNo description
PROSITE profilePS5086312.81610651166IPR003340B3 DNA binding domain
SMARTSM010197.6E-1110651166IPR003340B3 DNA binding domain
PfamPF023621.4E-1510691164IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1169 aa     Download sequence    Send to blast
MAQGPTYSPV FPFLLTSFFF PSYCHSPGRR WRRRGRQRAG EAVGGGRSCL AAQEGAETGL  60
NELARPRGRM LIALRTTSLK QRYIRIPEFL MQFTCMAGQG SQKKKSCDWS KRYVDHLNGK  120
MKCFHLQMSA NFGHSMTIPN KFLDHFGGTL SRTIELVSPK GIMYIVKVTE HMNKTILQCG  180
WEAFVDAHHI EENDSLLFRH IENSRFEVLI LDSDGCEKVF TCAGIKKTSS VQERNAAPVD  240
ISRSTHDETT QSSGSKKFVR CQRASDSQRG KTAKLAETSS SGESGEEGTD SSTSEDESSY  300
ELDDPQMPPG RNYVLSRWTS LSEAQEEKVD MLVQDIQPEI PVFVAIMKHS NVNSRRACLV  360
IPKRYASAHF PLESQTITLQ RQGKNKKWYP MFYIRKDGSG YMLYGCWKNF VRDNHVKEGD  420
MCIFHLTKFT GGEFGATVHL LRETKSGSLG SFHTSHKRFD LRDGRTWPKV TGVRRVSSRP  480
YLTADRVSLT EEQVRKVEEV VHSIQSEGPM YVSIMNKSNV GTDGLYIIIF GRQFATRYLP  540
EGEQTLTLLM TGKSNAWQVK MRPRSGDAQM ITTGWRHFVH DNHLQIEDIC LFQLMNDETN  600
QISDLASPGA SLGLGKLGTH QASSSTSGPE KRNCCSGKSP FKTTIPNPEM KKYCDCCKRY  660
VDHSNGKMKC FHRQMSANFE HSMIIPNKFL DQFGGKISRT VELESPKGNV YVVKVSKHMN  720
KTVLQCGWEA FVDAHQIEEN DSLLFRHIEN SRRASGVQER NADPIDVSSS THDDTVQSSG  780
GERFARSESG SDSQHREEAK ESSSSEHESS YDLVDPQIAP MPGYVLSRGT NLSQAHEEKL  840
DMLVQEIRPE IPLYVTTMKH SNVNSHHASL VIAKHYACAY FPHTSQTITL KWHGKNRKWH  900
PKFYIRKDQV GYILHGRWID FVRHNHVKEG DICIFHLKNF NGRKFRATVH LLRETIPHSF  960
GALHIPKRFE SRNGRMRLKM TDDRRVSSTE CRRGTMEPST TNVKKEADNE QCNNGQGKRQ  1020
EPLNFDVSVG SSKPYLTADR VSLTEEQFMK VEENVHSIQS EGPIYVSIMN KSNVGTDGLY  1080
IITLGRQFAI RYLPEGEQTL TLLTTGTGKA WQVKMRPRSG DARMFTLGWR DFVRDNRLQT  1140
EDICLFQLMK NSERGLAMKV HIIRHNERS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1004510.0AK100451.1 Oryza sativa Japonica Group cDNA clone:J023090P20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628609.10.0B3 domain-containing protein Os03g0620400 isoform X1
SwissprotQ851W40.0Y3205_ORYSJ; B3 domain-containing protein Os03g0620500
TrEMBLA0A0E0NYB80.0A0A0E0NYB8_ORYRU; Uncharacterized protein
STRINGORUFI03G27200.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.19e-13B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]