PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI03G27180.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 422aa    MW: 48712 Da    PI: 9.6968
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI03G27180.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3491.1e-15361171198
                      HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                       +++ +++p kf++++gg+   s t++l++++g  + v++  +k+++++vl+ GW+ Fv+a++++e+D+++F+++++s+f   v +f+
  ORUFI03G27180.1  36 DSRRSMIMPCKFVNHFGGD--FSGTIKLQSPNGILYVVEV--TKCKNKTVLRCGWEAFVDAHHIEENDSLLFRRVENSRF--EVLIFD 117
                      45566999*****888999..7779***************..*******************************8888888..888887 PP
2B3413.4e-131442192498
                      HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS..SEE..EEEEE- CS
               B3  24 eehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr..sefelvvkvfr 98 
                      e h   +++s+t+tl+   ++++W  ++  rk  ++ +l++ W eFvk+n+++e D++vF  +++  ++f+++v+++r
  ORUFI03G27180.1 144 EVHF--PHKSVTVTLQRpCKSKKWHPRFYKRKDARMNILRGSWVEFVKDNRVQEQDICVFVPTKDarRNFTFTVHLLR 219
                      3333..56899******5677*******77888889*************************66442577888887776 PP
3B3482.2e-153304071090
                      HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
               B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                      + ++++l l  +fa++  ++ ++  + ++ +++g++W   +++r + +r ++ +GW +Fv++n+L++gD+++F+++ +++ 
  ORUFI03G27180.1 330 SASRCQLELGARFAAAVHLPDRR--QTVVLQRRGERWATVMQIRSGTRRLLI-SGWHRFVRDNRLRVGDICLFEFKTHERW 407
                      345599********999888655..3666778*********88888877655.5********************8755444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.41E-2322121IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.5E-2024120IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.19626119IPR003340B3 DNA binding domain
CDDcd100177.95E-1928117No hitNo description
SMARTSM010194.9E-1029119IPR003340B3 DNA binding domain
PfamPF023622.4E-1437117IPR003340B3 DNA binding domain
SMARTSM010190.066121221IPR003340B3 DNA binding domain
SuperFamilySSF1019361.28E-14135219IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.9E-14136219IPR015300DNA-binding pseudobarrel domain
CDDcd100171.31E-13137219No hitNo description
PfamPF023622.2E-11142219IPR003340B3 DNA binding domain
PROSITE profilePS5086310.01153221IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-20310414IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-18311414IPR015300DNA-binding pseudobarrel domain
CDDcd100176.26E-15316418No hitNo description
PROSITE profilePS5086311.998321415IPR003340B3 DNA binding domain
SMARTSM010194.5E-4322420IPR003340B3 DNA binding domain
PfamPF023624.7E-13331409IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MAGSGSCMKK SCVCCQKYLE HLDGKMNCFV RRMTADSRRS MIMPCKFVNH FGGDFSGTIK  60
LQSPNGILYV VEVTKCKNKT VLRCGWEAFV DAHHIEENDS LLFRRVENSR FEVLIFDSDD  120
CEKERTVPLN MNLLSQVISF CYAEVHFPHK SVTVTLQRPC KSKKWHPRFY KRKDARMNIL  180
RGSWVEFVKD NRVQEQDICV FVPTKDARRN FTFTVHLLRV AAAYSRGGTG VDRAGSSLGR  240
TDVKSASEIS IKEEPIDQEE NVSSRNRNGV SDESEEDEDS EGPAHPPYIV PCKSRLSRLQ  300
KKIVEEKVRS FQSKFPVYVA IMKKSNVERS ASRCQLELGA RFAAAVHLPD RRQTVVLQRR  360
GERWATVMQI RSGTRRLLIS GWHRFVRDNR LRVGDICLFE FKTHERWRLT MAVHAIFREQ  420
CC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1193990.0AK119399.1 Oryza sativa Japonica Group cDNA clone:001-132-D12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633049.10.0B3 domain-containing protein Os03g0619600
RefseqXP_015633050.10.0B3 domain-containing protein Os03g0619600
SwissprotQ6AV220.0Y3196_ORYSJ; B3 domain-containing protein Os03g0619600
TrEMBLA0A0E0NYB60.0A0A0E0NYB6_ORYRU; Uncharacterized protein
STRINGORUFI03G27180.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-13B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]