PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI03G11820.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 258aa    MW: 26100 Da    PI: 5.3077
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI03G11820.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.47.2e-184998255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                      ykGVr ++ +g+Wv+eIr p     +  +r++lg++ t+e Aa+a++aa ++l+g
  ORUFI03G11820.1 49 PYKGVRMRS-WGSWVSEIRAP-----HqkRRIWLGSYATPEAAARAYDAALLCLKG 98
                     59****998.**********7.....335************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575128No hitNo description
PROSITE profilePS5103221.86549106IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.4E-2949108IPR001471AP2/ERF domain
SMARTSM003802.9E-3349112IPR001471AP2/ERF domain
PfamPF008475.4E-115098IPR001471AP2/ERF domain
CDDcd000181.02E-1850108No hitNo description
SuperFamilySSF541712.35E-1950107IPR016177DNA-binding domain
PRINTSPR003676.0E-85061IPR001471AP2/ERF domain
PRINTSPR003676.0E-87288IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0034605Biological Processcellular response to heat
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071497Biological Processcellular response to freezing
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MVKNTSNKCI AAAGATAAAG LGGGAASCSG GGGDGKVTTA AAAALAVRPY KGVRMRSWGS  60
WVSEIRAPHQ KRRIWLGSYA TPEAAARAYD AALLCLKGSD AILNFPSSAS SRRRLDIHRG  120
STDSAAGDMS PRSIQRVAAA AAAAFDAAAA GVVVDESCSC SAEAMSSTPT SGATSLSTLG  180
SSGGGDVLDH ATTPSSSSSA AANVCSPPLE GDHELWTELD AFASPKFMDL MAAGGTAFSS  240
PWEEPEEDGE LMRLWSFC
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00156DAPTransfer from AT1G21910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630150.10.0ethylene-responsive transcription factor ERF013
TrEMBLA0A0E0GK840.0A0A0E0GK84_ORYNI; Uncharacterized protein
TrEMBLA0A0E0NST40.0A0A0E0NST4_ORYRU; Uncharacterized protein
STRINGORUFI03G11820.10.0(Oryza rufipogon)
STRINGONIVA03G12660.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108303040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.12e-25ERF family protein