PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI03G09600.2

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 930aa MW: 101038 Da PI: 6.4654

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI03G09600.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.8	2.9e-11	757	805	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN+++ L++l+P + +k Ka++L + ++Y++sLq ORUFI03G09600.2 757 NSHSLAERFRREKINERMKLLQDLVPGC----NKITGKAMMLDEIINYVQSLQ 805 58************************....999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50053	8.96	1	88	IPR000626	Ubiquitin domain
Gene3D	G3DSA:3.10.20.90	1.1E-6	20	99	No hit	No description
PROSITE profile	PS50181	11.405	337	383	IPR001810	F-box domain
SuperFamily	SSF81383	8.63E-14	337	406	IPR001810	F-box domain
Gene3D	G3DSA:1.20.1280.50	4.7E-12	340	419	No hit	No description
Pfam	PF12937	5.4E-6	342	384	IPR001810	F-box domain
SMART	SM00256	1.5E-5	343	383	IPR001810	F-box domain
SuperFamily	SSF47459	5.37E-17	752	820	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.60E-11	752	809	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.6E-17	754	821	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.796	754	804	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.5E-9	757	805	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.3E-10	760	810	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 930 aa Download sequence Send to blast
MKLRLRSMDQ RGGAGGAAET HRVQLPDTAT LSDVKAFLAT KLSAAQPVPA ESVRLTLNRS 60 EELLTPDPSA TLPALGLASG DLLYFTLSPL PSPSPPPQPQ PQAQPLPRNP NPDVPSIAGA 120 ADPTKSPVES GSSSSMPQAL CTNPGLPVAS DPHHPPPDVV MAEAFAVIKS KSSLVVGDTK 180 REMENVGGAD GTVICRLVVA LHAALLDAGF LYANPVGSCL QLPQNWASGS FVPVSMKYTL 240 LELVEALPAV EEGMVAVLNY SLMGNFMMVY GHVPGATSGV RRLCLELPEL APLLYLDSDE 300 VSTAEEREIH ELWRVLKDEM CLPLMISLCQ LNNLSLPPCL MALPGDVKAK VLEFVPGVDL 360 ARVQCTCKEL RDLAADDNLW KKKCEMEFNT QGESSQVGRN WKERFGAAWK VSNNKGQKRP 420 SPFFNYGWGN PYSPHGFPVI GGDSDMLPFI GHPNLLGRSF GNQRRNISPS CSFGGHHRNF 480 LDTCGCMMCK CIYSDQRKDI VLADKYTCGN YMQKPVTQPG RWLIILVYHS LLCQYITIGL 540 SLLWYHLVDL GQPQRSKYKN PIRCQHTSAC RWQDAPAAGI HFDCIIPLPI NPYQLPPSAG 600 ACCSTTQASA SAKDGGNVLQ IPKPLEMYSP PCSAAASSQG HCFAVGANQL ASLDLAMDFD 660 EPILFPVHNA SLQEGIQFYN PTGDTQLSRN MSIDKCLKGS KRKGSGEGSS SLHSQEETGE 720 MPQRELSMEH AGEKAGDADA SREEYVHVRA KRGQATNSHS LAERFRREKI NERMKLLQDL 780 VPGCNKITGK AMMLDEIINY VQSLQRQVEF LSMKLSTISP ELNSDLDLQD ILCSQDARSA 840 FLGCSPQLSN AHPNLYRAAQ QCLSPPGLYG SVCVPNPADV HLARAGHLAS FPQQRGLIWN 900 EELRNIAPAG FASDAAGTSS LENSDSMKVE

Sequence ? help Back to Top

Protein Sequence Length: 930 aa Download sequence Send to blast

MKLRLRSMDQ RGGAGGAAET HRVQLPDTAT LSDVKAFLAT KLSAAQPVPA ESVRLTLNRS  60
EELLTPDPSA TLPALGLASG DLLYFTLSPL PSPSPPPQPQ PQAQPLPRNP NPDVPSIAGA  120
ADPTKSPVES GSSSSMPQAL CTNPGLPVAS DPHHPPPDVV MAEAFAVIKS KSSLVVGDTK  180
REMENVGGAD GTVICRLVVA LHAALLDAGF LYANPVGSCL QLPQNWASGS FVPVSMKYTL  240
LELVEALPAV EEGMVAVLNY SLMGNFMMVY GHVPGATSGV RRLCLELPEL APLLYLDSDE  300
VSTAEEREIH ELWRVLKDEM CLPLMISLCQ LNNLSLPPCL MALPGDVKAK VLEFVPGVDL  360
ARVQCTCKEL RDLAADDNLW KKKCEMEFNT QGESSQVGRN WKERFGAAWK VSNNKGQKRP  420
SPFFNYGWGN PYSPHGFPVI GGDSDMLPFI GHPNLLGRSF GNQRRNISPS CSFGGHHRNF  480
LDTCGCMMCK CIYSDQRKDI VLADKYTCGN YMQKPVTQPG RWLIILVYHS LLCQYITIGL  540
SLLWYHLVDL GQPQRSKYKN PIRCQHTSAC RWQDAPAAGI HFDCIIPLPI NPYQLPPSAG  600
ACCSTTQASA SAKDGGNVLQ IPKPLEMYSP PCSAAASSQG HCFAVGANQL ASLDLAMDFD  660
EPILFPVHNA SLQEGIQFYN PTGDTQLSRN MSIDKCLKGS KRKGSGEGSS SLHSQEETGE  720
MPQRELSMEH AGEKAGDADA SREEYVHVRA KRGQATNSHS LAERFRREKI NERMKLLQDL  780
VPGCNKITGK AMMLDEIINY VQSLQRQVEF LSMKLSTISP ELNSDLDLQD ILCSQDARSA  840
FLGCSPQLSN AHPNLYRAAQ QCLSPPGLYG SVCVPNPADV HLARAGHLAS FPQQRGLIWN  900
EELRNIAPAG FASDAAGTSS LENSDSMKVE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC135157	0.0	AC135157.2 Oryza sativa Japonica Group chromosome 3 clone OJ1017C11, complete sequence.
GenBank	AP014959	0.0	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015631331.1	0.0	F-box protein SKIP22
TrEMBL	A0A0E0NS12	0.0	A0A0E0NS12_ORYRU; Uncharacterized protein
STRING	ORUFI03G09600.2	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4536	29	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10120.1	4e-45	bHLH family protein