PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI03G09600.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 923aa MW: 100186 Da PI: 6.3969

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI03G09600.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.8	2.9e-11	750	798	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN+++ L++l+P + +k Ka++L + ++Y++sLq ORUFI03G09600.1 750 NSHSLAERFRREKINERMKLLQDLVPGC----NKITGKAMMLDEIINYVQSLQ 798 58************************....999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50053	8.96	1	88	IPR000626	Ubiquitin domain
Gene3D	G3DSA:3.10.20.90	1.1E-6	20	99	No hit	No description
PROSITE profile	PS50181	11.405	337	383	IPR001810	F-box domain
SuperFamily	SSF81383	8.63E-14	337	406	IPR001810	F-box domain
Gene3D	G3DSA:1.20.1280.50	4.5E-12	340	419	No hit	No description
Pfam	PF12937	5.3E-6	342	384	IPR001810	F-box domain
SMART	SM00256	1.5E-5	343	383	IPR001810	F-box domain
CDD	cd00083	3.56E-11	745	802	No hit	No description
SuperFamily	SSF47459	5.23E-17	745	813	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.6E-17	747	814	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.796	747	797	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.4E-9	750	798	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.3E-10	753	803	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 923 aa Download sequence Send to blast
MKLRLRSMDQ RGGAGGAAET HRVQLPDTAT LSDVKAFLAT KLSAAQPVPA ESVRLTLNRS 60 EELLTPDPSA TLPALGLASG DLLYFTLSPL PSPSPPPQPQ PQAQPLPRNP NPDVPSIAGA 120 ADPTKSPVES GSSSSMPQAL CTNPGLPVAS DPHHPPPDVV MAEAFAVIKS KSSLVVGDTK 180 REMENVGGAD GTVICRLVVA LHAALLDAGF LYANPVGSCL QLPQNWASGS FVPVSMKYTL 240 LELVEALPAV EEGMVAVLNY SLMGNFMMVY GHVPGATSGV RRLCLELPEL APLLYLDSDE 300 VSTAEEREIH ELWRVLKDEM CLPLMISLCQ LNNLSLPPCL MALPGDVKAK VLEFVPGVDL 360 ARVQCTCKEL RDLAADDNLW KKKCEMEFNT QGESSQVGRN WKERFGAAWK VSNNKGQKRP 420 SPFFNYGWGN PYSPHGFPVI GGDSDMLPFI GHPNLLGRSF GNQRRNISPS CSFGGHHRNF 480 LDTCGCMMCK CIYSDQRKDI VLADKYTCGN YMQKPVTQPV YHSLLCQYIT IGLSLLWYHL 540 VDLGQPQRSK YKNPIRCQHT SACRWQDAPA AGIHFDCIIP LPINPYQLPP SAGACCSTTQ 600 ASASAKDGGN VLQIPKPLEM YSPPCSAAAS SQGHCFAVGA NQLASLDLAM DFDEPILFPV 660 HNASLQEGIQ FYNPTGDTQL SRNMSIDKCL KGSKRKGSGE GSSSLHSQEE TGEMPQRELS 720 MEHAGEKAGD ADASREEYVH VRAKRGQATN SHSLAERFRR EKINERMKLL QDLVPGCNKI 780 TGKAMMLDEI INYVQSLQRQ VEFLSMKLST ISPELNSDLD LQDILCSQDA RSAFLGCSPQ 840 LSNAHPNLYR AAQQCLSPPG LYGSVCVPNP ADVHLARAGH LASFPQQRGL IWNEELRNIA 900 PAGFASDAAG TSSLENSDSM KVE

Sequence ? help Back to Top

Protein Sequence Length: 923 aa Download sequence Send to blast

MKLRLRSMDQ RGGAGGAAET HRVQLPDTAT LSDVKAFLAT KLSAAQPVPA ESVRLTLNRS  60
EELLTPDPSA TLPALGLASG DLLYFTLSPL PSPSPPPQPQ PQAQPLPRNP NPDVPSIAGA  120
ADPTKSPVES GSSSSMPQAL CTNPGLPVAS DPHHPPPDVV MAEAFAVIKS KSSLVVGDTK  180
REMENVGGAD GTVICRLVVA LHAALLDAGF LYANPVGSCL QLPQNWASGS FVPVSMKYTL  240
LELVEALPAV EEGMVAVLNY SLMGNFMMVY GHVPGATSGV RRLCLELPEL APLLYLDSDE  300
VSTAEEREIH ELWRVLKDEM CLPLMISLCQ LNNLSLPPCL MALPGDVKAK VLEFVPGVDL  360
ARVQCTCKEL RDLAADDNLW KKKCEMEFNT QGESSQVGRN WKERFGAAWK VSNNKGQKRP  420
SPFFNYGWGN PYSPHGFPVI GGDSDMLPFI GHPNLLGRSF GNQRRNISPS CSFGGHHRNF  480
LDTCGCMMCK CIYSDQRKDI VLADKYTCGN YMQKPVTQPV YHSLLCQYIT IGLSLLWYHL  540
VDLGQPQRSK YKNPIRCQHT SACRWQDAPA AGIHFDCIIP LPINPYQLPP SAGACCSTTQ  600
ASASAKDGGN VLQIPKPLEM YSPPCSAAAS SQGHCFAVGA NQLASLDLAM DFDEPILFPV  660
HNASLQEGIQ FYNPTGDTQL SRNMSIDKCL KGSKRKGSGE GSSSLHSQEE TGEMPQRELS  720
MEHAGEKAGD ADASREEYVH VRAKRGQATN SHSLAERFRR EKINERMKLL QDLVPGCNKI  780
TGKAMMLDEI INYVQSLQRQ VEFLSMKLST ISPELNSDLD LQDILCSQDA RSAFLGCSPQ  840
LSNAHPNLYR AAQQCLSPPG LYGSVCVPNP ADVHLARAGH LASFPQQRGL IWNEELRNIA  900
PAGFASDAAG TSSLENSDSM KVE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC135157	0.0	AC135157.2 Oryza sativa Japonica Group chromosome 3 clone OJ1017C11, complete sequence.
GenBank	AP014959	0.0	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015631331.1	0.0	F-box protein SKIP22
TrEMBL	A0A0E0NS11	0.0	A0A0E0NS11_ORYRU; Uncharacterized protein
STRING	ORUFI03G09600.2	0.0	(Oryza rufipogon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10120.1	3e-45	bHLH family protein