PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI03G07580.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 326aa    MW: 35281.3 Da    PI: 8.1154
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI03G07580.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.39e-112502901055
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  ORUFI03G07580.1 250 RKRRERINERLKILQNLIPNG-----TKVDISTMLEEAVHYVKFLQ 290
                      9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.856240289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.55E-14243303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-12245299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-11246295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.41E-12249294No hitNo description
PfamPF000104.5E-8250290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MESSEASWHS FDPSVAMEDS EAMAQLLGVQ YFGNDQEQQQ PAAAAPPAMY WPAHDAADQY  60
YGSAPYCYMQ QQQHYGCYDG GAMVAGGDFF VPEEQLLHGG PEPRVRGPAR RPPPPAATKM  120
TPACKRKVED HKDESCTDNV ARKKARSTAA TVVQKKGNKN AQSKKAQKGA CSRSSNQKES  180
NGGGDGGNVQ SSSTNYLSDD DSLSLEMTSC SNVSSASKKS SLSSPATGHG GAKARAGRGA  240
ATDPQSLYAR KRRERINERL KILQNLIPNG TKVDISTMLE EAVHYVKFLQ LQIKLLSSDD  300
MWMFAPIAYN GVNVGLDLKI SPPQQQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1235681e-165AC123568.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1345H02, from chromosome 3, complete sequence.
GenBankAC1322141e-165AC132214.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0040M05, from chromosome 3, complete sequence.
GenBankAP0149591e-165AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126111e-165CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629469.11e-180transcription factor bHLH85
TrEMBLA0A0E0NR780.0A0A0E0NR78_ORYRU; Uncharacterized protein
STRINGORUFI03G07580.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116802832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.11e-45bHLH family protein