PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI03G07010.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 546aa    MW: 57008.4 Da    PI: 8.5509
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI03G07010.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.6e-056082123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C++C+k F r  nL+ H r H
  ORUFI03G07010.1 60 FVCEICNKGFQRDQNLQLHRRGH 82
                     89*******************88 PP
2zf-C2H213.20.00027136158123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC +C+k +  +s+ k H +t+
  ORUFI03G07010.1 136 WKCDKCSKKYAVQSDWKAHTKTC 158
                      58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.19E-75982No hitNo description
Gene3DG3DSA:3.30.160.601.8E-55982IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9496082IPR007087Zinc finger, C2H2
SMARTSM003550.0176082IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806282IPR007087Zinc finger, C2H2
SMARTSM00355190101131IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.2E-4124157IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.19E-7131156No hitNo description
SMARTSM00355140136156IPR015880Zinc finger, C2H2-like
PRINTSPR012177.3E-9213225No hitNo description
PRINTSPR012177.3E-9227243No hitNo description
PRINTSPR012177.3E-9260272No hitNo description
PRINTSPR012177.3E-9348365No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009937Biological Processregulation of gibberellic acid mediated signaling pathway
GO:0010029Biological Processregulation of seed germination
GO:0010431Biological Processseed maturation
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MEVETSSGTA ERGAGAGAQQ QPPPQPQPPA KKKRALPGMP DPDAEVIALS PKTLLATNRF  60
VCEICNKGFQ RDQNLQLHRR GHNLPWKLRQ RSGKEVRKRV YVCPEPTCVH HDPSRALGDL  120
TGIKKHFCRK HGEKKWKCDK CSKKYAVQSD WKAHTKTCGS REYRCDCGTL FSRRDSFITH  180
RAFCDALAEE SAKARAAPPP PADEDGTSAS AGAPPPQAPL PPPAPVPAPA PPPPPAAAPA  240
PAAQPEQRDR DAALDQFATP APPPVTAPPP PPVAAPNDCV SSSSSGVAPT SQSLLSSMFA  300
PPSVAQAPQY ADPIGVGAGG HQERAVPAKP PALCLAPNAS SSLFTAPVPA DRQQFAPPPP  360
PSPSPHMSAT ALLQKAAQMG ATSSSSSFLR CLGLDMSSSS SAPPSSSGQQ QQHHHHHHQE  420
TMQVPLPASS LPEWPPRLQP EPSPMLSSGL GLGLPYDATG GPVSLPELMM GQSTLFSAKP  480
ATLDFLGLGV SPTGASTSRG FPTFIQPIGS AVSLAGSATV AAETFGAAHG GQANPWERNP  540
SSSPIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-35132193364Zinc finger protein JACKDAW
5b3h_F1e-35132193364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00592DAPTransfer from AT5G66730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632656.10.0protein indeterminate-domain 1
SwissprotQ9LVQ71e-136IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLA0A0E0NR050.0A0A0E0NR05_ORYRU; Uncharacterized protein
STRINGORUFI03G07010.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.18e-97indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]