PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI03G05920.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 590aa    MW: 61850.6 Da    PI: 4.1821
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI03G05920.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.72.5e-17360410155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y GVr+++ +g+W+AeIrd +        r++lg+f tae Aa a++aa++ l+g
  ORUFI03G05920.1 360 SKYWGVRRRP-WGKWAAEIRDlV-----EgVRVWLGTFATAEAAAHAYDAAARDLRG 410
                      79********.**********76.....45************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.5E-66084IPR001471AP2/ERF domain
PfamPF008479.4E-11360410IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-21360419IPR016177DNA-binding domain
CDDcd000181.08E-13360417No hitNo description
Gene3DG3DSA:3.30.730.105.7E-29361420IPR001471AP2/ERF domain
PROSITE profilePS5103222.431361418IPR001471AP2/ERF domain
SMARTSM003803.8E-32361424IPR001471AP2/ERF domain
PRINTSPR003678.8E-9362373IPR001471AP2/ERF domain
PRINTSPR003678.8E-9384400IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MCGGAILAEL IPSAPAARRV TAGHVWPGDA NKAKKKGARA DDFEAAFRDF DNDSDDEEMM  60
AAALAYDDAA RAIRGDRAKL NFPSATTPDT RKRGRATAAA APAVKATPVI NLVEEEDEEE  120
EVAAAMSSIK YEPETSESSE SNALPDFSWQ GMSASDEFAV AAAALSLDSD DDLAKKRPRT  180
EPEDTTTTTD SGSGDDTDAL FDALLFADQY NYFNGGAYES LDSLFSADAV QTTAAAAAAD  240
QGMGLWSFDD GCCLVDVEAS LSSRGNPRSN DDMCGGAILA NIIPATPPRR ATAAHVWPGG  300
DGEKRRKVGG GGCDDDFEAA FERFGREDSE MEEEEVEEVV VGKKAAAAAG GAAGRRARPS  360
KYWGVRRRPW GKWAAEIRDL VEGVRVWLGT FATAEAAAHA YDAAARDLRG ATAKLNFPSS  420
SSSTAATPRP RKCRPTTATA TPKATTPNVV VVVNLIDKEA EASESSGASS SALPDFSWQG  480
MSASSDDDAA AQQALLDAAG GAKKRPRSEP HVTSDDEVLP ASFDSDNNTA AAGLLPLDDP  540
FLFGDQFGDL NGGAFASLMD GLFAAGEANV AGESVGLWSF GDDCLNASYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-18351419473Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0796330.0AC079633.9 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0032G08, from Chromosome 3, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630586.11e-145ethylene-responsive transcription factor ERF073
TrEMBLA0A0E0NQM10.0A0A0E0NQM1_ORYRU; Uncharacterized protein
STRINGORUFI03G05920.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43712654
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.13e-16ERF family protein