PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI03G05880.3
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 359aa    MW: 39380.8 Da    PI: 5.4345
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI03G05880.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.67.2e-19153203155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GVr+++ +gr++AeIrdp++    +r++lg++g+aeeAa a+++ +++++g
  ORUFI03G05880.3 153 SKYRGVRRRP-SGRFAAEIRDPKK---GRRVWLGTYGSAEEAAMAYDREARRIRG 203
                      89********.7*********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.22E-28153211No hitNo description
PfamPF008471.8E-12153203IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-21153212IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.9E-28154211IPR001471AP2/ERF domain
PROSITE profilePS5103221.97154211IPR001471AP2/ERF domain
SMARTSM003802.0E-32154217IPR001471AP2/ERF domain
PRINTSPR003672.3E-7155166IPR001471AP2/ERF domain
PRINTSPR003672.3E-7177193IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MSAISSSIIV VVPIPTSASD GDADADDFSS IYHSPASRHS DVSPGERRAR RAMCGGAILA  60
DFTPARVPRR LTAAELLPVT PTPPAAERRT TRKRKSDVDF EAEFELFEDD DDDDEFELSD  120
DGDEISSDVS SSSRPRRRVA AAAAGRRKAS KKSKYRGVRR RPSGRFAAEI RDPKKGRRVW  180
LGTYGSAEEA AMAYDREARR IRGKGARLNF PRDGDGSPRR SNDRPCWTID LNLPAAAVSG  240
DDDDAMAVDA ADADAGSAGR AAAYADQEAL SAAKCKIKQC PRDEQMASAT PELMEEDASS  300
SRNMVPLSMA LQLQYAAMIA ECDREMEEIA AVERDLERRR RQVFERRGHL VRQASLLLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-19150211163ATERF1
3gcc_A3e-19150211163ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19095TRKRKS
2146161RKASKKSKYRGVRRRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0731330.0AK073133.1 Oryza sativa Japonica Group cDNA clone:J033023E13, full insert sequence.
GenBankAY3234780.0AY323478.1 Oryza sativa (japonica cultivar-group) ap2 domain containing protein (cap2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632275.11e-153ethylene-responsive transcription factor RAP2-12
TrEMBLA0A0E0NQL70.0A0A0E0NQL7_ORYRU; Uncharacterized protein
STRINGORUFI03G05880.11e-177(Oryza rufipogon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.12e-24ERF family protein