PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI03G05880.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 388aa    MW: 42374.1 Da    PI: 5.9629
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI03G05880.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.58e-19172222155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GVr+++ +gr++AeIrdp++    +r++lg++g+aeeAa a+++ +++++g
  ORUFI03G05880.1 172 SKYRGVRRRP-SGRFAAEIRDPKK---GRRVWLGTYGSAEEAAMAYDREARRIRG 222
                      89********.7*********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.0E-12172222IPR001471AP2/ERF domain
CDDcd000182.38E-28172230No hitNo description
SuperFamilySSF541711.11E-20172231IPR016177DNA-binding domain
PROSITE profilePS5103221.97173230IPR001471AP2/ERF domain
SMARTSM003802.0E-32173236IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.5E-28173230IPR001471AP2/ERF domain
PRINTSPR003672.6E-7174185IPR001471AP2/ERF domain
PRINTSPR003672.6E-7196212IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MSAISSSIIV VVPIPTSASD GDADADDFSS IYHSPASRHS DVSPGERRAR RAMCGGAILA  60
DFTPARVPRR LTAAELLPVT PTPPAAERRT TRKRKSDVDF EAEFELFEDD DDDDEFELSD  120
DGDESLAVSC VSSPKSKAVP SFSFSSDVSS SSRPRRRVAA AAAGRRKASK KSKYRGVRRR  180
PSGRFAAEIR DPKKGRRVWL GTYGSAEEAA MAYDREARRI RGKGARLNFP RDGDGSPRRS  240
NDRPCWTIDL NLPAAAVSGD DDDAMAVDAA DADAGSAGRA AAYAGTTTSE DISRYQEALS  300
AAKCKIKQCP RDEQMASATP ELMEEDASSS RNMVPLSMAL QLQYAAMIAE CDREMEEIAA  360
VERDLERRRR QVFERRGHLV RQASLLLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-19169230163ATERF1
3gcc_A4e-19169230163ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19095TRKRKS
2165180RKASKKSKYRGVRRRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3234780.0AY323478.1 Oryza sativa (japonica cultivar-group) ap2 domain containing protein (cap2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632275.11e-161ethylene-responsive transcription factor RAP2-12
TrEMBLA0A0E0NQL50.0A0A0E0NQL5_ORYRU; Uncharacterized protein
STRINGORUFI03G05880.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136642229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.13e-22ERF family protein