PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI02G32430.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 277aa    MW: 31940.2 Da    PI: 9.7968
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI02G32430.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.85e-13101145348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       WT+eEde+l ++ k+   ++W ++ar+m+ gR++ +c+ rw+ +l
  ORUFI02G32430.1 101 EWTAEEDERLRRLAKENLFRQWWKVAREMP-GRSGDSCRARWRHHL 145
                      7*****************************.***********9886 PP
2Myb_DNA-binding22.92e-07153196348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      ++T+ +de lv++++  Gg  W++I+r +  gRt    ++rw +++
  ORUFI02G32430.1 153 PFTARDDEELVRLHRHTGGS-WRKISRSVY-GRTSAIMRDRWIQLR 196
                      79****************88.********9.****99999998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.42494149IPR017930Myb domain
SuperFamilySSF466893.33E-2096192IPR009057Homeodomain-like
SMARTSM007175.3E-1098147IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-17101153IPR009057Homeodomain-like
PfamPF002498.0E-11101144IPR001005SANT/Myb domain
CDDcd001672.53E-10101145No hitNo description
SMARTSM007170.0016150198IPR001005SANT/Myb domain
PROSITE profilePS5129410.852151200IPR017930Myb domain
CDDcd001670.00164153195No hitNo description
Gene3DG3DSA:1.10.10.603.6E-9154196IPR009057Homeodomain-like
PfamPF139215.3E-6154197No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MEEEKEEMAI PAVPVDFFQL MIDGSSKQWR WGRRGESSNR SQWREERLLI EKMSMRKKMQ  60
LGRYPCSRCN QPRSRGGETS MATAAAAKCR CSRRRRLPER EWTAEEDERL RRLAKENLFR  120
QWWKVAREMP GRSGDSCRAR WRHHLARDVY HRPFTARDDE ELVRLHRHTG GSWRKISRSV  180
YGRTSAIMRD RWIQLRRSGL VPDAAKTAEN AGCPPPAADD SEYMGSEAEL KSPPPPPQQQ  240
HPLADVLASS LDSCTLASDA TDPRDGILAL DFAFMSV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3osf_A1e-129920911120MYB21
3osf_D1e-129920911120MYB21
3osg_A1e-129920911120MYB21
3osg_D1e-129920911120MYB21
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0051130.0AP005113.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0685G12.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624539.11e-141transcription factor MYB3R-5
TrEMBLA0A0E0NKB90.0A0A0E0NKB9_ORYRU; Uncharacterized protein
STRINGORUFI02G32430.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2205166
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.12e-22myb domain protein r1