PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI02G29230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 224aa MW: 23916.5 Da PI: 4.9599 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.2 | 4.2e-18 | 53 | 103 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + +kGVr++ grWv+e+r+p g ++r++lg+f tae+Aa+a++ a+++l+g ORUFI02G29230.1 53 PVFKGVRRRN-PGRWVCEVREP--HG-KQRIWLGTFETAEMAARAHDVAALALRG 103 579****887.9******9996..33.5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.9E-13 | 53 | 103 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-21 | 54 | 112 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.5E-28 | 54 | 117 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.667 | 54 | 111 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.9E-30 | 54 | 113 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.6E-8 | 55 | 66 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.05E-20 | 55 | 113 | No hit | No description |
PRINTS | PR00367 | 8.6E-8 | 77 | 93 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MDVSAALSSD YSSGTPSPVA ADADDGSSAY MTVSSAPPKR RAGRTKFKET RHPVFKGVRR 60 RNPGRWVCEV REPHGKQRIW LGTFETAEMA ARAHDVAALA LRGRAACLNF ADSPRRLRVP 120 PIGASHDDIR RAAAEAAEAF RPPPDESNAA TEVAAAASGA TNSNAEQFAS HPYYEVMDDG 180 LDLGMQGYLD MAQGMLIDPP PMAGDPAVGG GEDDNDGEVQ LWSY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 6e-14 | 52 | 110 | 12 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00644 | PBM | Transfer from LOC_Os02g45450 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK060550 | 0.0 | AK060550.1 Oryza sativa Japonica Group cDNA clone:001-021-H10, full insert sequence. | |||
GenBank | AK106041 | 0.0 | AK106041.1 Oryza sativa Japonica Group cDNA clone:001-206-E01, full insert sequence. | |||
GenBank | AP005775 | 0.0 | AP005775.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0005A04. | |||
GenBank | AP006060 | 0.0 | AP006060.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0135D07. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624757.1 | 1e-162 | dehydration-responsive element-binding protein 1G | ||||
Swissprot | Q6EP77 | 1e-163 | DRE1G_ORYSJ; Dehydration-responsive element-binding protein 1G | ||||
TrEMBL | A0A0D9YWE3 | 1e-162 | A0A0D9YWE3_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0NJ65 | 1e-162 | A0A0E0NJ65_ORYRU; Uncharacterized protein | ||||
STRING | OGLUM02G28340.1 | 1e-163 | (Oryza glumipatula) | ||||
STRING | ORUFI02G29230.1 | 1e-163 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP196 | 36 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25470.1 | 6e-35 | C-repeat/DRE binding factor 2 |
Publications ? help Back to Top | |||
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