PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI02G28150.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 325aa    MW: 33742.5 Da    PI: 5.3989
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI02G28150.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.8e-05626323
                     ETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                     C+ C ++F ++  L  H+r+H
  ORUFI02G28150.1  6 CKLCYRRFASPRALAGHMRSH 26
                     ********************9 PP
2zf-C2H211.50.00093182204123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++Cp C+k+F++   L  H  +H
  ORUFI02G28150.1 182 FQCPACKKVFRSYQALGGHRASH 204
                      89**********99999998887 PP
3zf-C2H2110.0013246268123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++Cp+C ++F +   L  H ++H
  ORUFI02G28150.1 246 HECPYCYRVFASGQALGGHKKSH 268
                      79************999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.14426IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.141427IPR007087Zinc finger, C2H2
PfamPF139121.2E-4626IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
PfamPF139128.0E-11181204IPR007087Zinc finger, C2H2
SuperFamilySSF576676.31E-8181204No hitNo description
SMARTSM003550.026182204IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.286182204IPR007087Zinc finger, C2H2
PROSITE patternPS000280184204IPR007087Zinc finger, C2H2
SuperFamilySSF576676.31E-8241268No hitNo description
PfamPF139129.3E-12246268IPR007087Zinc finger, C2H2
SMARTSM003550.39246268IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.912246268IPR007087Zinc finger, C2H2
PROSITE patternPS000280248268IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MAKNACKLCY RRFASPRALA GHMRSHSVAA ANAAAAAAAA ATAADEEEEE EEEEEDVGFK  60
KPLSIYALRE NPKRSLRVSE YAFSDRESEA ESTPTPAAKG LRAGAGGGGG DGEPMSSLSY  120
AGTPEEEVAL ALMMLSRDTW PSVERGGGGG EYSDDGSDDG YALPPPSPAP APAPVPEKRT  180
RFQCPACKKV FRSYQALGGH RASHVRGGRG GCCAPPVAPP PQPHPQPPLP EHDAGEEDMD  240
GKAPPHECPY CYRVFASGQA LGGHKKSHVC SAAAAAAHAQ TPGGGAPPPQ PKILGMIDLN  300
FAPPVDEVEL SAVSDPHFPS NPPGP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0050720.0AP005072.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0708H12.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624884.11e-162zinc finger protein ZAT1
TrEMBLA0A0E0NIR70.0A0A0E0NIR7_ORYRU; Uncharacterized protein
STRINGORUFI02G28150.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35183377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02030.15e-29C2H2-like zinc finger protein