PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI02G27390.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Trihelix | ||||||||
Protein Properties | Length: 629aa MW: 67793.1 Da PI: 4.6031 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 93.2 | 2.5e-29 | 88 | 172 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+++e+laLi++r+em+ ++r++ lk+p Wee s++++e g++rs k+Ckek+en+ k+yk++keg+ +r++++s +++f+qlea ORUFI02G27390.1 88 RWPREETLALIRIRSEMDAAFRNATLKAPVWEELSRRLAELGYQRSGKKCKEKFENVDKYYKRTKEGRTGRQDGKS--YRFFSQLEA 172 8*********************************************************************866665..*******85 PP | |||||||
2 | trihelix | 108 | 6.4e-34 | 396 | 481 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k+ev+aLi++r e+ee++++ k+plWee+++ m++ g++rs+k+Ckekwen+nk++kk+ke++k+r +e+s+tcpyf+ql+a ORUFI02G27390.1 396 RWPKEEVQALIDLRMEKEEQYNDMGPKGPLWEEIAAGMQRIGYNRSAKRCKEKWENINKYFKKVKESNKRR-PEDSKTCPYFHQLDA 481 8********************************************************************97.99***********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.22 | 85 | 147 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 1.68E-27 | 87 | 152 | No hit | No description |
Pfam | PF13837 | 5.7E-21 | 87 | 173 | No hit | No description |
PROSITE profile | PS50090 | 7.085 | 87 | 145 | IPR017877 | Myb-like domain |
SMART | SM00717 | 1.0E-5 | 393 | 455 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 7.851 | 395 | 453 | IPR017877 | Myb-like domain |
CDD | cd12203 | 4.22E-27 | 395 | 460 | No hit | No description |
SuperFamily | SSF46689 | 8.54E-5 | 395 | 463 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.0E-5 | 395 | 452 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 2.5E-22 | 396 | 482 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010192 | Biological Process | mucilage biosynthetic process | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 629 aa Download sequence Send to blast |
MQHPQGAGDP PYGVVPAPPT MAAAFDLPPV TTPAPAAPSD VLLPTQPQVS GPEEFPAAAV 60 NSNDDDMMMV DDVVVAGGVG GSGSTGNRWP REETLALIRI RSEMDAAFRN ATLKAPVWEE 120 LSRRLAELGY QRSGKKCKEK FENVDKYYKR TKEGRTGRQD GKSYRFFSQL EALHAAAPPP 180 PPQQRQGMPV EDPQPLAMAR MMLPGAADLG FLSMSSESES DDESDEEEEE EEEAVAPGGG 240 GREGLGDDGD GDGEGGSSTR KLMAMFEGMM RQVTEKQDAM QRVFLETLEK WEAERTEREE 300 AWRRKEVARI NREREQLSKE RAAAASRDAA LIAFLQRVGG AGGEPVRLSP SSAGATRHDA 360 AAAGLQLVPV PAPRAKAEDA WAAAGGDGSG TTAPSRWPKE EVQALIDLRM EKEEQYNDMG 420 PKGPLWEEIA AGMQRIGYNR SAKRCKEKWE NINKYFKKVK ESNKRRPEDS KTCPYFHQLD 480 AIYRKKHFAG RGGGGGGVTI AASHSSLAIV TVSEQDNPSQ RELEGKSSND VGNVQLAVPL 540 LVHNAPDKKV EGSEGEPNVT AAAEETDSDE MGGEYTDDGD DDDKMQYKIE FQKPTAGGGG 600 DGNDAPVPAT TAAATSSAPT SNTSFLAVQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00243 | DAP | Transfer from AT1G76880 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK111742 | 0.0 | AK111742.1 Oryza sativa Japonica Group cDNA clone:J023050K14, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015622654.1 | 0.0 | trihelix transcription factor GTL1 isoform X2 | ||||
Refseq | XP_025878531.1 | 0.0 | trihelix transcription factor GTL1 isoform X2 | ||||
Swissprot | Q39117 | 2e-68 | TGT2_ARATH; Trihelix transcription factor GT-2 | ||||
TrEMBL | A0A0E0NIH1 | 0.0 | A0A0E0NIH1_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI02G27390.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP606 | 38 | 175 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76890.2 | 2e-46 | Trihelix family protein |