PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI02G13120.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 221aa MW: 22777.1 Da PI: 9.6966 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.5 | 0.00093 | 67 | 86 | 2 | 21 |
EETTTTEEESSHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHir 21 +C+ Cg+ F ++ L H+r ORUFI02G13120.1 67 PCTECGRQFLSWKALFGHMR 86 5******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.052 | 66 | 88 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.12 | 66 | 88 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.21E-5 | 67 | 88 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 68 | 88 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 4.0E-7 | 68 | 90 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.21E-5 | 162 | 189 | No hit | No description |
PROSITE profile | PS50157 | 9.827 | 167 | 194 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 7.9E-11 | 167 | 190 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 3.9 | 167 | 189 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 169 | 189 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MAQQHSPPPP PAPPSPPPAL PCDPMPPPPR HDDTTLTLSL APPAAARPLQ AMVARAKCSS 60 PTGDAPPCTE CGRQFLSWKA LFGHMRCHPE RHWRGITPPG GGGAGAASST AASQFTLRER 120 EVAASLLMLS GAHPARSGAG KGKGKKRLLA PAAAAAPHHS PATCADHKCA VCHRGFATGQ 180 ALGGHKRCHW PDRSCADQAI SMLAVSTAGS SSVLIDQKSA F |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003988 | 0.0 | AP003988.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1057_D08. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012610 | 0.0 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025878826.1 | 1e-148 | zinc finger protein ZAT3-like | ||||
TrEMBL | A0A0E0NDC5 | 1e-153 | A0A0E0NDC5_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI02G13120.1 | 1e-154 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11612 | 21 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35280.1 | 4e-20 | C2H2-like zinc finger protein |