PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI02G12670.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 1134aa    MW: 124706 Da    PI: 4.1626
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI02G12670.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM45.81.9e-14101521128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknra.....tk..sgyWkat 86 
                      l pGf+F+P+ e+l++++L + +++++l ++ v+   d  ++ Pw L  ++ +++e+e yf  +      +g r++++     t    g W ++
  ORUFI02G12670.1  10 LSPGFKFNPSVEQLLCFFLLPYLQHRRLLVDGVVFLDDPASAPPWALLhRHGRGGEDEAYFIGPVPAGDGHGGRRQQQvsrtvTGggGGKWIKQ 103
                      579************************9998888888**********834555677799***9999888876554443233333266889*999 PP

              NAM  87 gkdkevlsk.......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++++  ++       +++  +   +L f+  ++ ++ +t Wvmhe+++
  ORUFI02G12670.1 104 RTERPRGEEepvvvfgGETFRWEEFSLNFHADERCRSGSTGWVMHEFAV 152
                      88888777655555544444888899****99999999*********75 PP
2NAM45.52.4e-146417741127
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev..ikevd..iykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgk 88 
                      l pGf+F+P+d+ lv  +L + + + +l++     +++ +   + + Pw L  ++ +++e+e yf ++       g r+ r ++  g W ++ +
  ORUFI02G12670.1 641 LSPGFKFNPSDQMLVELFLLPYLIDGELPVRGLvfVEDDHlgGLPLPPWILLdRHGRGDEDEAYFVAPMGA--GDGARQVRsVAGGGKWVKQRS 732
                      579**********************9988866432444331146679****73444445558888887765..56889999788899**97765 PP

              NAM  89 ..dkevlsk..kgelvglkktLvfykgrapkgektdWvmheyr 127
                        + ev+++  +++  +   +L f++ ++++g +t Wvmhey 
  ORUFI02G12670.1 733 egKGEVVVApgGEAFLWENFSLNFHRDDRRSG-STGWVMHEYI 774
                      22334444444555588899*****8777776.9********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.75E-283172IPR003441NAC domain
PROSITE profilePS5100523.52110172IPR003441NAC domain
PfamPF023652.2E-912151IPR003441NAC domain
SuperFamilySSF1019412.88E-25632781IPR003441NAC domain
PROSITE profilePS5100521.919641795IPR003441NAC domain
PfamPF023659.9E-11643774IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1134 aa     Download sequence    Send to blast
MATAAESQGL SPGFKFNPSV EQLLCFFLLP YLQHRRLLVD GVVFLDDPAS APPWALLHRH  60
GRGGEDEAYF IGPVPAGDGH GGRRQQQVSR TVTGGGGGKW IKQRTERPRG EEEPVVVFGG  120
ETFRWEEFSL NFHADERCRS GSTGWVMHEF AVVPPAGSRV AATHTACRIA FTGHGQKRKR  180
VPDGYVFVDV HVQTAAAAAA VAPPLPMLSS YGEPPHEHFS DDHPPPHSYT YYTQEYQQFL  240
PAAEQSDQEQ EYCAPEQQNF QDYHVAAAEQ TDQDYFYTEM INQEQDYAYQ QQQQHLFHGD  300
FLATSQQFLG QDHEVMFTGL GGGLVVSDNG EHASAAAPAT EPPVHDVFLE TLVPEPPENA  360
YVDGAGESAM ASASSAGGAP LLEQPFATPP QQFLDQEPAP AGLNDGGAMI YNNNGDGEHD  420
AAPAAQPPAR YYSGPVPAVD SVFLDKMREY LMADAKGLCR IDAPINNGEH AAAPAPAADD  480
PLASQHGHGD APPLPVPPDA AELERVVGHL LREVEDIIKV AAAGGYGGSS DKPLSEFDKA  540
QNQILAKLMA VFNQVAETED GSVTMTVTAV RSGRQQLLWR ELRTSLGEAN LPSMRLGEAD  600
PSLPSSGVSD PSLPISGVVD PPSMGSGSRR PMAAAARSQG LSPGFKFNPS DQMLVELFLL  660
PYLIDGELPV RGLVFVEDDH LGGLPLPPWI LLDRHGRGDE DEAYFVAPMG AGDGARQVRS  720
VAGGGKWVKQ RSEGKGEVVV APGGEAFLWE NFSLNFHRDD RRSGSTGWVM HEYIVSPPAG  780
SAVAASHRAT HIAFTGHGQN RKRVPDGYVL VLDDAVPPAA AAAAPPPESE QSNQEEQEYA  840
AYTDQIQQQC FVPEQQMSNQ EYFPEAAAEQ SNQQFFVPAE EQSSHQLFLP AEEQSNQQFF  900
MPAEEQSSHQ FLPAEEQSSH QFLPAEEQSN YQQFLPALEQ MTQSNQEFAY GEQSQCYIVP  960
EQQQLSNQEY AYSEQSQCYI LPEQQQLSDQ EYAYSEQSQC YILPEQQELS NQEAEYAFVC  1020
YDEQQQQQQQ SNQEAEYAFA CYDEQQQQQQ QQYLHGDLTS WQEPFVTSSS SSSQQFLGQE  1080
QLLPDGLLLD GFGEISQQQG DQEYAYCEES QCYIMPEQQQ QSNQEAEFAF ACYD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0040010.0AP004001.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1115_D03.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0ND650.0A0A0E0ND65_ORYRU; Uncharacterized protein
STRINGORUFI02G12670.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143261123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.16e-06NAC domain containing protein 47